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Protein Overview: GLUQ_ECOLI, YADB...

General Information:
Name(s) found: YADB_ECOLI [Swiss-Prot]
GLUQ_ECOLI [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • (P27305) Hypothetical protein yadB [Swiss-Prot]
  • Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs) - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTQYIGRF APSPSGELHF GSLIAALGSY LQARARQGRW LVRIEDIDPP REVPGAAETI  60
   61 LRQLEHYGLH WDGDVLWQSQ RHDAYREALA WLHEQGLSYY CTCTRARIQS IGGIYDGHCR 120
  121 VLHHGPDNAA VRIRQQHPVT QFTDQLRGII HADEKLARED FIIHRRDGLF AYNLAVVVDD 180
  181 HFQGVTEIVR GADLIEPTVR QISLYQLFGW KVPDYIHLPL ALNPQGAKLS KQNHAPALPK 240
  241 GDPRPVLIAA LQFLGQQAEA HWQDFSVEQI LQSAVKNWRL TAVPESAIVN STFSNASC

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. GLUQ_ECOLI, YADB... LGUL_ECOLI gi|134105085, gi... gi|189095939, gi... gi|60594470, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..298] PSI-BLAST 70.69897 Crystal Structure and Activity Studies of Escherichia Coli Yadb ORF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  6.4693800838561 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  6.4693800838561 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  6.4443227172352 bayes_pls_golite062009
  • ligase activity
    		•  5.65872852832815 bayes_pls_golite062009
  • catalytic activity
    		•  2.74718220535323 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  1.69027214128932 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  1.63830426964771 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.51606758855865 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.33068350385001 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  1.02341432978103 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  0.92755725518345 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.64528548803763 bayes_pls_golite062009
  • transferase activity
    		•  0.565342623537184 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.67

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle