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Protein Overview: TFS_THECE

General Information:
Name(s) found: TFS_THECE [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Transcription factor S OS=Thermococcus celer GN=tfs PE=1 SV=1 [Swiss-Prot]
    • Organism: Thermococcus celer
    Length: 110 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFCPKCGNL MLPDRKRKVW VCRSCGYEEP FDEEKDREKT VIKQEVKHKP DEGIVVIEQD  60
   61 LKTLPTTKIT CPKCGNDTAY WWEMQTRAGD EPSTIFYKCT KCGHTWRSYE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..61] Pfam 27.853872 No description for PF02150.7 was found. No confident structure predictions are available.
    2 View Details [62..110] PSI-BLAST 13.69897 THERMOCOCCUS CELER RPB9, NMR, 25 STRUCTURES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.87472871386782 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.87472871386782 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  7.01586910046629 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  6.30881681756207 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.66342402708121 bayes_pls_golite062009
  • transferase activity
    		•  3.6513313586587 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.36253105801209 bayes_pls_golite062009
  • binding
    		•  2.58311326284197 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  2.03339710864117 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.8086747972572 bayes_pls_golite062009
  • DNA binding
    		•  1.76634962183736 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.57988053581899 bayes_pls_golite062009
  • DNA primase activity
    		•  1.01743034310838 bayes_pls_golite062009
  • protein binding
    		•  0.764662055834369 bayes_pls_golite062009
  • catalytic activity
    		•  0.434839928397784 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle