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Protein Overview: rig-PB

General Information:
Name(s) found: rig-PB / FBpp0085564 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • The gene rigor mortis is referred to in FlyBase by the symbol Dmel\rig (CG30149, FBgn0250850). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:16521381..16528191. It has the cytological map location 57A8. There is experimental evidence that it has the molecular function</span>: protein binding. There is experimental evidence that it is involved in the biological process</span>: response to ecdysone; molting cycle, chitin-based cuticle. 9 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1235 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    Biological Process: response to ecdysone [IMP]
    molting cycle, chitin-based cuticle [IMP]
    Molecular Function: protein binding [IPI]
    ligand-dependent nuclear receptor transcription coactivator activity [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSQVMYHNV PTPPGNVSLA AAAPDGGLLY AGIRCINYIS APPANGEQPQ VVTMSTRINI  60
   61 LALDVSPMWG LGNGGPTKPF AIVGDDLSVQ VWDCALGEAV IGHKAHQHQH EARDVRVVHH 120
  121 TTNSVLMSYL ANGNILSMDA SDLVIYCVAS NTYCRRSTFI SPRNHQLTMV RCSPYNDNLF 180
  181 AVGTAMGNVL VCDLRKMNIV YKFHGHKAPI CGLAWREVPA AEDEKTNNLA LSAEEWRSRN 240
  241 GGQEEKPKTK PPPLTKSKAA ESDDPFDIYN FDHLEYEFGA PIAERRRKSS EDCGGEFVGL 300
  301 EKPAGAAVLD FVEACESVKA ELLASRQEDK TQHVEVTLHD CEPTKPTGPL SDASTISNKN 360
  361 DASDSTEGSL EVIQYSSSSD DAVIVDGEAA KPKREVLHHI YHQAEVHASG TPQTKSEPQS 420
  421 NLQVVPAISA ETISLTSVNS THLETLLVSI DGDEVMMIWN TNTGAHAGKN YSKSKTAGKL 480
  481 NNVYWLNNHV IVSLSRHQLF FWSVEFERKM LRYKISKDKS HSCHLQDIVS FACDSSKEMI 540
  541 WLCRNNRQIG MMNPKTGRMA DFYGTVAFGV RAMAECPDDM NKIALGCSDR RVAFFDISKL 600
  601 TTSCLPIDSV YVSSNVYCLA WSPNCLELAF GTFDGTVGIL DVERMKVKTH LRTPHKKEVY 660
  661 SLVWQDHFIY FIVNRVLGFF DLRKSKIEPT IVNCISRPSY LSIRDSFLFV GTDDGLLQIH 720
  721 ERDSGMEKSW SPFIRQSALF ARYVTDIAWC PLDSNKFAVS GNDRSVYVME FQPTERNWKT 780
  781 LHTFTANTEK ASITSMRWSH TQKHLLLTFH IEGKVCLWNC NAPEKPPLTI TYHCPMWCGM 840
  841 FLPTNENIIM CSGKALSVEL IDIKDALEGD EKSICPKVDA LLNVKWASKS LTQPYAPVLT 900
  901 AAEKKRQRRD QRKAAAKLEV DVANKDQKKI QESVTAVIDN PTNDKCTQET PVEEMLEALS 960
  961 LDKEQNNRSA KECPKCKEQS PDSFTHSRTC LYLTQKELNK SALEKLAIVL TEDSAKIDKS1020
 1021 VLISKLFSSK VMAKELIATE LTNLKHSNTK DIAPLCLAMS TFKLREELEQ HIANKTLTER1080
 1081 HVSLAPSVSF TLWQDCCRAY AKQMEEKGYI MHAATYLFSQ GMQSEAIKLF LANEYYKEAL1140
 1141 VHARICLPAT DPLIKTVINN WLEHLEGTGN FAAAALICVL DNEMLRGYSY LRKYRNCTPE1200
 1201 IADLMDQIKR IGQLGGVLDG CAPNEPIHNG STAEH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] deduced N/A No confident structure predictions are available.
    2 View Details [143..393] PSI-BLAST 8.045757 Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2
    3 View Details [394..986] PSI-BLAST 66.30103 Actin interacting protein 1
    4 View Details [987..1235] FFAS03 1.87 No description for 2pm6A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.074040936650541 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle