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Protein Overview: vab-10

General Information:
Name(s) found: vab-10 / CE41290 [WormBase]
Description(s) found:
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  • WBGene00006876 locus:vab-10 status:Partially_confirmed UniProt:G5EFD1 protein_id:CAN99698.1 [WormBase]
  • gi|193203703|ref|NP_001122565.1| Variable ABnormal morphology family member (vab-10) [Caenorhabditis elegans] [NCBI NR]
  • gi|148879403|emb|CAN99698.1| C. elegans protein ZK1151.1i, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|148879398|emb|CAN99699.1| C. elegans protein ZK1151.1i, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • CE41290 WBGene00006876 locus:vab-10 status:Partially_confirmed UniProt:A5Z2W9_CAEEL protein_id:CAN99699.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE41290 WBGene00006876 locus:vab-10 status:Partially_confirmed UniProt:A5Z2W9_CAEEL protein_id:CAN99699.1| [wormORF-contam.fasta]
  • CE41290 WBGene00006876 locus:vab-10 status:Partially_confirmed TR:A5Z2W9 protein_id:CAN99698.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE41290 WBGene00006876 locus:vab-10 status:Partially_confirmed UniProt:A5Z2W9 protein_id:CAN99699.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE41290 WBGene00006876 locus:vab-10 status:Partially_confirmed UniProt:G5EFD1 protein_id:CAN99698.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of G5EDD3, Uncharacterized protein OS=Caenorhabditis elegans GN=vab-10 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 1497 amino acids

    Gene Ontology:
    Cellular Component: intracellular organelle [IDALink to PubMed article]
    basal plasma membrane [IDALink to PubMed article]
    membrane [IEALink to PubMed article]
    intermediate filament [IDALink to PubMed article]
    apical plasma membrane [IDALink to PubMed article]
    proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: cell cycle arrest [IEALink to PubMed article]
    DNA repair [IEALink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    signal transduction [IEALink to PubMed article]
    locomotion [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    protein amino acid dephosphorylation [IEALink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    chemotaxis [IEALink to PubMed article]
    locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    gastrulation with mouth forming first [IMPLink to PubMed article]
    Molecular Function: actin binding [IEALink to PubMed article]
    protein tyrosine phosphatase activity [IEALink to PubMed article]
    calcium ion binding [IEALink to PubMed article]
    signal transducer activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLLDYFYF CAREVLCHTF GITCATGAGS EIALVARDPT TYYRPSSSNS DPTYRETGTP  60
   61 ISWSEGGGGL SSTSSSSCPS ASSQFPLILR SSPSPPQPPQ QQHAQHREYS SFSFSSSSFT 120
  121 TPSSSSSYSS SSSSSSSNSH ACDHCDSYVW HATSCLATTA LLLFGLATTL TMLKVVRSYS 180
  181 KKAERKSESS RASAQGGSQQ AISGGGGAGA GGGGNSSYYE EYSSRNGAAG GNGHVGNGGG 240
  241 QIIHHAHNQH LSNAQQAHGG FSESSSYETR EHFERKVQRV KKTRGERERS RSGKRDDVSL 300
  301 HGSDATSARD ALLQWARRVT AGYPRVNVNN FSSSWRDGLA FNAILHRYRS SAIDWNKISS 360
  361 DSVSNTERLN NAFAAADREF GVERLLDAED VDTNNPDEKS IITYVSSLYN ALPHEPEMSR 420
  421 LQKVQEEYIE EAYEWREWVV RAIQLVDDRH LQGTASELIY ELQRFREDDL PPREEQKRRL 480
  481 TLVYEHLEKV MRSTELFAIP HELSAPELQR VWNELQNSID RRFDVLERHR IQEGNSNDLL 540
  541 SRLARGIGIT NEKLDLILKR IEDVEARVDT SPPAAVERTV SEIVDDLNAL ESPIARFFED 600
  601 VEELKSMQHP EANDFYKQVY GLHQRRTTYL DRLTNQILVR LGVRTDSLHK ENQQRLENMR 660
  661 KTSFSRVEEC IEWVRVRMEK LTTMEFLEDL ETLEHVFEQH KFDNRDIQDF RQNVDECIAR 720
  721 QAEVSAEDTY EYCELLRVLE SEYQQLRDLS AGRMLDLDSL IAFVRAAQLE LIWVSERESI 780
  781 EVTRNWSDIK QLDLPMLTNY YKQLLHEMEL REKQYNDVHN QGAALLNQGH PAIRVIEVYL 840
  841 RQMQSQWDWL LALSKCLEEH LRDALNLKSF MEEASDAEAW IQEQSVRLEN NYNRTDFSLE 900
  901 EGERFLRELD EIKEILNKYH QVLMALTERC ASISPLWQRG ERIPHPIKVT ALCDYSDENV 960
  961 TIKAGDDVYL LDNSDLIKWT IRDISGAEGQ VPSVVFRIPP TDARLTALLN RLLQQFEKLK1020
 1021 KLWDKKHRMV RFNMVLNTMR TIQGWDLDTF NSIDPDQRDA IMKALNDDAN KLLSELDPND1080
 1081 PLALRLREEL RRTNEHFWNL LNASQKPPEP DWASQYDQKM AELLKKLEEA WRELNDAVGK1140
 1141 PISRSPEDLE RVIHAHKRFE DALQALDSDV ANVKELFRQL PNPTPTQRVN HDRLNGLWDD1200
 1201 LWDLSRMYVE RIKVLESVLN GMVEVADIVR QHEITLNSFD DLPAALDKLR GHHSQLLEIN1260
 1261 MVLKQQQTVI DQLNRNVALL RQHVSRTRIN EGHHPDVDAI EDEVQKLNVR WENVNSQIAS1320
 1321 RLLAVESALQ IQMVYRSEYE TEMSWLDTVE ETINRLRKPE ELRPEQYQQQ LDMLIAEYTN1380
 1381 LQEHTQAIEH VNKEGGRFIH EAKIFDAKLG QYSDGIVGIH GPGIKSEFRR TKPQPKNGSQ1440
 1441 IVTEELELLN RRFAQLSSLI LERRNTMQVL IQNWKRQKQV SYRVFDISHI SHHLLPS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle