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Protein Overview: SO0369

General Information:
Name(s) found: SO0369 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • transcriptional regulator LysR family [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 295 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHFSALPIF VTVVECGSFS LAGQKLGLSK SAISKRISQL EQHLGIQLLQ RTTRSLSLTD  60
   61 AGARYFEYIR PAVQLTQEGL DAISELQQTP RGNLRISVPM VFGRLYIAPL IAEFLKRYPD 120
  121 IQLQMQMDDK ITDLIAGGFD LAIRIGELPD SSLIARKIAP CLSVICASPA YLTQHGLPMT 180
  181 PCELTQHNCL FYSYFQDGVE WSFHSPDGMQ RVQPKGNYQV NNSDAINQAC LDGLGIANLP 240
  241 RFIVEPDLQT GHLQALLTDY PLPEHGIYAV YPQRKYQPTK VTVLIEFLMA KLGQY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..295] PSI-BLAST 47.522879 COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.06846313752146 bayes_pls_golite062009
  • transcription factor activity
    		•  1.54776226622667 bayes_pls_golite062009
  • DNA binding
    		•  1.53867658911479 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.45471488657915 bayes_pls_golite062009
  • binding
    		•  1.29220115989941 bayes_pls_golite062009
  • catalytic activity
    		•  1.04475291968158 bayes_pls_golite062009
  • protein binding
    		•  0.0639574144110515 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle