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Protein Overview: SO0174

General Information:
Name(s) found: SO0174 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • general secretion pathway protein L [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 395 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLFIRLG RTAEQACSWL VWSEQEQEII ASGELANAQG LSTLTERAGN RPIDVLVPAS  60
   61 AMTLTSVNLP EKGQRQALKA LPFMLEESIA DDVDAMHFTV GPRNGDALSV VAVAHEQMQT 120
  121 WLSCLADAGL KVKRIVPDCL ALPLQECQWA AMRFGNELLL RTGLGTGHSL PLPWLPVAMK 180
  181 QLTAQAEELS VASYSEMQLD GVELKPQPLD LPMLVLARGI LHAPINLLSG VYTPKREYSK 240
  241 HLLQWKNAAI VLAVAIVLSL VNKGLTIHQV NGQIADLKAQ SEAIYQQVVP GNTRIVNLRS 300
  301 QMESQLRSLQ GQGSGAEFFS MLAGLQDAFK QVPELKPNSL RFESARNEIR MQVTAKNYAQ 360
  361 IEKFKEIVGR RFQMDGGTMN SGEDQVTSTL TLRSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] PSI-BLAST 56.69897 cyto-EpsL: the cytoplasmic domain of EpsL, an inner membrane component of the type II secretion system of Vibrio cholerae
    2 View Details [234..331] deduced N/A No confident structure predictions are available.
    3 View Details [332..395] MSA 1.087988 View MSA. Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein transporter activity
    		•  4.02866382720893 bayes_pls_golite062009
  • protein binding
    		•  1.35507414089234 bayes_pls_golite062009
  • binding
    		•  1.02845327471562 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.900931843471417 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.898645342556399 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.875671218597808 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.78242344952806 bayes_pls_golite062009
  • transporter activity
    		•  0.765123574918886 bayes_pls_golite062009
  • ATPase activity
    		•  0.687771333492666 bayes_pls_golite062009
  • unfolded protein binding
    		•  0.280566495830281 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.182906814232639 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.64

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle