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Protein Overview: SO0287

General Information:
Name(s) found: SO0287 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
Found 5 descriptions.
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  • 3-dehydroquinate synthase [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 359 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQIQVDLG ERSYPIYIGQ SLMSDSETLS RYLLKKRILI VTNETVAPLY LKQVQDTMAS  60
   61 FGEISSVILS DGEQFKDLTH LDSIFTALLQ RNYGRDSVLV ALGGGVIGDM TGFAAACYQR 120
  121 GIDFIQIPTT LLSQVDSSVG GKTAVNHPLG KNMIGAFYQP QIVIIDTECL QTLPAREFAA 180
  181 GMAEVIKYGI MWDADFFQWL ENNVQALKSL DTQALVYAIS RCCEIKADVV SQDETEQGVR 240
  241 ALLNLGHTFG HAIEAEMGYG NWLHGEAVAA GTVLAAQTAK SLGLIDESIV CRIVQLLQAF 300
  301 DLPVKAPESM DFESFIQHMR RDKKVLGGQI RLVLPTAIGR AEVFSQVPES TLEQVICCA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..359] PSI-BLAST 64.30103 Dehydroquinate synthase, DHQS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.74401602170192 bayes_pls_golite062009
  • 3-dehydroquinate synthase activity
    		•  2.74084565855098 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.95599923468797 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.93261339792959 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  1.57272461554663 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.29330307870321 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  0.0292631371096151 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle