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Protein Overview: sma-9

General Information:
Name(s) found: sma-9 / CE36402 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00004862 locus:sma-9 status:Confirmed UniProt:G5ED62 protein_id:CAF31486.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 537 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: transforming growth factor beta receptor signaling pathway [IGILink to PubMed article]
    tail tip morphogenesis [IMPLink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKHIKSHT DVRAFNCTAC NFSFKTKGNL TKHLSSKTHQ RRISNIQAGN DSDGTTPSTS  60
   61 SMMNMDDGYH RNQPLFDDYD NNSSDEEDYD HLNRMQAEHK FKFGQEHILF ERTAHTPPTR 120
  121 WCLVEAQNDH YWPSPDRRSC MSAPPVAMQR DFDDRAMTPV SGANSPYLSQ QVHSPMSTSS 180
  181 QSNIILDIPN NQKSNCSSVS NVSPSNSQNF QSLSTVPTCA SSSSNVLVPN VNFLQKDETL 240
  241 KCDQCDRTFR KISDLTLHQH THNIEMQQSK NRMYQCSECK IPIRTKAQLQ KHLERNHGVH 300
  301 MDESVTACID PLASTQSVLG GPSTSNPRSF MCVDCDIGFR KHGILAKHLR SKTHVMKLES 360
  361 LQRLPVDTLS LITKKDNGAC LNDIDTTDCE KARISLLAIV EKLRNEADKD EQGSVVPTTS 420
  421 IPAPQPVALT PEMIRALANA QTPVTASMTN TPSTAQFPVG VVSTPSQLQQ LHYVAQSNCG 480
  481 STGVSNTKSV IPIGIVLNAV QKESSFGLGN TRERHAQNNS TNLGDSVQST SQSSTSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] PSI-BLAST 21.522879 Five-finger GLI1
    2 View Details [163..297] PSI-BLAST 14.154902 No description for 2yt9A was found.
    3 View Details [298..537] PSI-BLAST 57.522879 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.414217765611205 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle