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Protein Overview: CE36942

General Information:
Name(s) found: CE36942 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00019241 status:Partially_confirmed UniProt:Q9N5L0 protein_id:CCD72437.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 603 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA metabolic process [IEALink to PubMed article]
    RNA processing [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA methyltransferase activity [IEALink to PubMed article]
    rRNA (uridine) methyltransferase activity [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPVDIKTE TPELTPEVKE EKAIDLDRIH IKNIPTFIGF KQFKKVLEKI LGDVKSKKVR  60
   61 HMSDYAYVTF ETPEDAQKAI NLVDGYDYKK FILSAQLAAT EVKSFRPANP ENTEPAQQKT 120
  121 ARESVTPLAE MEYGKQLELK QQNSVGVVEK LYRQLIQNKV AHLGKQTQFR DRVLREILPA 180
  181 PKTAGYRNKC EFTIGHDLNG EICVGFVGGR FSKNQHFVIP PVDVDIVSTQ MMAIVGDVHE 240
  241 FVKESALEPF NEFDRKGFWR MLTIREFGGD VMLIFTVFPL EDGVERMEEI QKKIETRFLD 300
  301 FETFKEKKYR VCSIYWQQMV HISDTPNFKL IGGTPYIYES LLDCRFRVSP PAFFQTNSQA 360
  361 AAVLYSTIGE HCGLSEKKTN EDVPVETDAS EKAPEAPAAP SEPIPDDPSD APPAKIPRIE 420
  421 PEPTAADEAP APEDPGTILL DICCGTGTIG QCLLKNIQKS QKVCCIGIEM IAEAVEDAKQ 480
  481 NAKQNKMETC CKYIAGKAED TFRSMRYHLP NGFDLRKSRV VGVLDPPRAG MHEKVILACR 540
  541 EMETMRRLIF VSCEPNAAIS NIVNLCRPSS RKYTGDAFSV TRVQPVDMFP QTNHMEWIIQ 600
  601 LDR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212] PSI-BLAST 10.39794 Poly(A)-binding protein
    2 View Details [213..603] PSI-BLAST 45.39794 Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.723277178398499 bayes_pls_golite062009
  • transferase activity
    		•  0.64512166557639 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.54403439349476 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.54389223881989 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle