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Protein Overview: vps-41

General Information:
Name(s) found: vps-41 / CE37009 [WormBase]
Description(s) found:
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  • WBGene00017974 locus:vps-41 Vacuolar protein sorting-associated protein 41 homolog status:Partially_confirmed UniProt:Q19954 protein_id:CCD65714.1 [WormBase]
  • gi|86564848|ref|NP_001033544.1| related to yeast Vacuolar Protein Sorting factor family member (vps-41) [Caenorhabditis elegans] [NCBI NR]
  • gi|62906653|sp|Q19954|VPS41_CAEEL Vacuolar protein sorting-associated protein 41 homolog [NCBI NR]
  • gi|50727052|gb|AAA81388.3| Related to yeast vacuolar protein sorting factor protein 41, isoform a, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Vacuolar protein sorting-associated protein 41 homolog - Caenorhabditis elegans [Swiss-Prot]
  • Hypothetical protein F32A6.3 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE37009 WBGene00017974 locus:vps-41 status:Partially_confirmed SW:Q19954 protein_id:AAA81388.3 [wormpep150.fasta]
  • 37009 WBGene00017974 status:Partially_confirmed SW:Q19954 protein_id:AAA81388.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE37009 WBGene00017974 status:Partially_confirmed SW:Q19954 protein_id:AAA81388.3 [wormpep132.fasta]
  • 37009 WBGene00017974 locus:vps-41 status:Partially_confirmed SW:Q19954 protein_id:AAA81388.3 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE37009 WBGene00017974 locus:vps-41 status:Partially_confirmed UniProt:VPS41_CAEEL protein_id:AAA81388.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE37009 WBGene00017974 locus:vps-41 status:Partially_confirmed UniProt:VPS41_CAEEL protein_id:AAA81388.3| [wormORF-contam.fasta]
  • Vacuolar protein sorting-associated protein 41 homolog [nr-271106-contam.fasta]
  • related to yeast Vacuolar Protein Sorting factor family member (vps-41) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Related to yeast vacuolar protein sorting factor protein 41, isoform a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE37009 WBGene00017974 locus:vps-41 status:Partially_confirmed UniProt:Q19954 protein_id:AAA81388.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE37009 WBGene00017974 locus:vps-41 status:Partially_confirmed UniProt:Q19954 protein_id:CCD65714.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE37009 WBGene00017974 locus:vps-41 status:Partially_confirmed UniProt:Q19954 protein_id:CCD65714.1 Vacuolar protein sorting-associated protein 41 homolog [wormpep246-ecoli-contam.fasta]
  • Isoform of Q19954, Isoform a of Vacuolar protein sorting-associated protein 41 homolog OS=Caenorhabditis elegans GN=vps-41 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 759 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: vesicle-mediated transport [IEALink to PubMed article]
    cell death [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    intracellular protein transport [IEALink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSIYFSPD FIRQQSGHCF IMGERNLVLY EKRMFQYKAS SLYSGSERDG FIHCCSWNEN  60
   61 LIAFTNDTGT RVYERGAERI ITSVQPSHDV DRVRSSRSPP KHTWMPENNL VIGWADTVTI 120
  121 LKIRDDDGVK KGEVHHIFHV SMFICGISYI PESGIDNMEL FLVGLQLEGE DFDDCASVIS 180
  181 TVTTLTALES SACTILKTSV IRPLGLKEFE LQSEDMIESV KLSNHTLPYM IHGLGIPYLA 240
  241 TYFILTTKHI IMAVPYGPED GIRWRLKYKL YDEALDMAKH NADLLSKTDL SPKKVGRMII 300
  301 EGYLTGKRAR AAASRLPLIC GECKEEWEWA VNQFEEVKLC TLLAEVLPDG TPTLDPECYQ 360
  361 KVLIACLFNN VKQFRKLVQT WSPDLYMTSF IIDRTQWRIQ QISKSGNLAD VDETERVLMD 420
  421 ALAHLYLYER KYESALKILM SCQDFQIFNV IDKHQLFDLV KDQITELMNI NSERALRLLL 480
  481 DNADSVEPSF VMEKIGRQPK LQLAYLTKLM SRNEGTEFAD KAVQLYAEYD QKKLLPFLRK 540
  541 NANYNVNKAR KLCSDKGYIE ETIYLLAKSG NHYDAVKMMV REYRNMEKVI DYCKDQNDPD 600
  601 LWIHLLGVVA EFPAHFSQLI IEASNCLDPL LIMDKLPDDS DIPNLSEALD KLLVDYTNHA 660
  661 ELQQCCYDST LNDLNVLTQG LISAADESVS VNIVSRCSLC AQIIINSNQE TTKKFSDIKV 720
  721 FKCGHIFHLA CSTSEMERRQ SIEEGLCIAC SDQIELINV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] MSA 3.103981 View MSA. No confident structure predictions are available.
    2 View Details [134..759] PSI-BLAST 69.522879 Clathrin D6 Coat


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle