| Protein: | vps-41 |
| Organism: | Caenorhabditis elegans |
| Length: | 759 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps-41.
| Description | E-value | Query Range |
Subject Range |
|
|
505.0 | [0..3] | [749..128] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MPKSIYFSPD FIRQQSGHCF IMGERNLVLY EKRMFQYKAS SLYSGSERDG FIHCCSWNEN 60
61 LIAFTNDTGT RVYERGAERI ITSVQPSHDV DRVRSSRSPP KHTWMPENNL VIGWADTVTI 120
121 LKIRDDDGVK KGE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [134-759] |
1 11 21 31 41 51
| | | | | |
1 VHHIFHVSMF ICGISYIPES GIDNMELFLV GLQLEGEDFD DCASVISTVT TLTALESSAC 60
61 TILKTSVIRP LGLKEFELQS EDMIESVKLS NHTLPYMIHG LGIPYLATYF ILTTKHIIMA 120
121 VPYGPEDGIR WRLKYKLYDE ALDMAKHNAD LLSKTDLSPK KVGRMIIEGY LTGKRARAAA 180
181 SRLPLICGEC KEEWEWAVNQ FEEVKLCTLL AEVLPDGTPT LDPECYQKVL IACLFNNVKQ 240
241 FRKLVQTWSP DLYMTSFIID RTQWRIQQIS KSGNLADVDE TERVLMDALA HLYLYERKYE 300
301 SALKILMSCQ DFQIFNVIDK HQLFDLVKDQ ITELMNINSE RALRLLLDNA DSVEPSFVME 360
361 KIGRQPKLQL AYLTKLMSRN EGTEFADKAV QLYAEYDQKK LLPFLRKNAN YNVNKARKLC 420
421 SDKGYIEETI YLLAKSGNHY DAVKMMVREY RNMEKVIDYC KDQNDPDLWI HLLGVVAEFP 480
481 AHFSQLIIEA SNCLDPLLIM DKLPDDSDIP NLSEALDKLL VDYTNHAELQ QCCYDSTLND 540
541 LNVLTQGLIS AADESVSVNI VSRCSLCAQI IINSNQETTK KFSDIKVFKC GHIFHLACST 600
601 SEMERRQSIE EGLCIACSDQ IELINV
|
| Detection Method: | |
| Confidence: | 69.522879 |
| Match: | 1xi4A |
| Description: | Clathrin D6 Coat |
Matching Structure (courtesy of the PDB): |
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