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Protein Overview: lgc-38

General Information:
Name(s) found: lgc-38 / CE36534 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00017389 locus:lgc-38 status:Partially_confirmed UniProt:Q19358 protein_id:CCD63396.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 459 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWLLWSLLI GYVTTEHPPL MKSDKLIEYA PQASTEPTLG GESNENLENN VTRLLDKLIA  60
   61 SHDRRIRPNY GGPPIEVNIT AHVTTISAVS EVSMDYTLDL YLRQIWKDPR LAWESDVEDS 120
  121 LTIGIDMVKT IWTPDTFFPN EKKSFFHEAT SHNSFLRIDN HGNVLRSIRL TVTANCPMSL 180
  181 HTFPLDRQEC ALEVESYGYS TKDIIYHWHG TNAVTIDENV HLAHFTIGEH KHIERTISLS 240
  241 TGNYSRLTAY FLFKRNIGFY LIQIYFPSSL IVVISWVSFW LNREAVQARV AIGVTTVLTM 300
  301 TTLMTSTNAS LPKVSYVKSL DVFLGVCFFI VFASLLEYAA IGYLMKRNRS VPAASPVQYY 360
  361 ETGDGVLKRE ASRKKSRNRR DSSMKNYQNN NIHHRPSDGH VDQRIPLLSM VPMPPIPFKP 420
  421 QNGAWGKVRP AQVDLFSRFA FPIFFVIFHI VYWTYYINQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..374] PSI-BLAST 69.69897 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    2 View Details [375..459] PSI-BLAST 29.0 Acetylcholine receptor protein, alpha chain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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