| Protein: | lgc-38 |
| Organism: | Caenorhabditis elegans |
| Length: | 459 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-38.
| Description | E-value | Query Range |
Subject Range |
|
|
348.0 | [0..30] | [456..247] |
|
Region A: Residues: [1-374] |
1 11 21 31 41 51
| | | | | |
1 MTWLLWSLLI GYVTTEHPPL MKSDKLIEYA PQASTEPTLG GESNENLENN VTRLLDKLIA 60
61 SHDRRIRPNY GGPPIEVNIT AHVTTISAVS EVSMDYTLDL YLRQIWKDPR LAWESDVEDS 120
121 LTIGIDMVKT IWTPDTFFPN EKKSFFHEAT SHNSFLRIDN HGNVLRSIRL TVTANCPMSL 180
181 HTFPLDRQEC ALEVESYGYS TKDIIYHWHG TNAVTIDENV HLAHFTIGEH KHIERTISLS 240
241 TGNYSRLTAY FLFKRNIGFY LIQIYFPSSL IVVISWVSFW LNREAVQARV AIGVTTVLTM 300
301 TTLMTSTNAS LPKVSYVKSL DVFLGVCFFI VFASLLEYAA IGYLMKRNRS VPAASPVQYY 360
361 ETGDGVLKRE ASRK
|
| Detection Method: |  |
| Confidence: | 69.69897 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [375-459] |
1 11 21 31 41 51
| | | | | |
1 KSRNRRDSSM KNYQNNNIHH RPSDGHVDQR IPLLSMVPMP PIPFKPQNGA WGKVRPAQVD 60
61 LFSRFAFPIF FVIFHIVYWT YYINQ
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
