YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-38
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWLLWSLLI GYVTTEHPPL MKSDKLIEYA PQASTEPTLG GESNENLENN VTRLLDKLIA  60
   61 SHDRRIRPNY GGPPIEVNIT AHVTTISAVS EVSMDYTLDL YLRQIWKDPR LAWESDVEDS 120
  121 LTIGIDMVKT IWTPDTFFPN EKKSFFHEAT SHNSFLRIDN HGNVLRSIRL TVTANCPMSL 180
  181 HTFPLDRQEC ALEVESYGYS TKDIIYHWHG TNAVTIDENV HLAHFTIGEH KHIERTISLS 240
  241 TGNYSRLTAY FLFKRNIGFY LIQIYFPSSL IVVISWVSFW LNREAVQARV AIGVTTVLTM 300
  301 TTLMTSTNAS LPKVSYVKSL DVFLGVCFFI VFASLLEYAA IGYLMKRNRS VPAASPVQYY 360
  361 ETGDGVLKRE ASRKKSRNRR DSSMKNYQNN NIHHRPSDGH VDQRIPLLSM VPMPPIPFKP 420
  421 QNGAWGKVRP AQVDLFSRFA FPIFFVIFHI VYWTYYINQ

Type	Start	End	Confidence
Signal Peptide	1	15	0.55
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	258	0.94
Transmembrane Helix	259	280	0.92
Cytoplasmic	281	289	0.75
Transmembrane Helix	290	311	0.86
Non-Cytoplasmic	312	321	0.80
Transmembrane Helix	322	341	0.95
Cytoplasmic	342	434	0.96
Transmembrane Helix	435	456	0.90
Non-Cytoplasmic	457	459	0.87