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Protein Overview: lgc-41

General Information:
Name(s) found: lgc-41 / CE36632 [WormBase]
Description(s) found:
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  • WBGene00008022 locus:lgc-41 status:Partially_confirmed UniProt:Q18518 protein_id:CAA90332.3 [WormBase]
  • gi|71985004|ref|NP_509753.2| Ligand-Gated ion Channel family member (lgc-41) [Caenorhabditis elegans] [NCBI NR]
  • gi|50507496|emb|CAA90332.3| C. elegans protein C39B10.2a, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Hypothetical protein C39B10.2 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE36632 WBGene00008022 gamma-aminobutyric-acid receptor status:Partially_confirmed TR:Q18518 protein_id:CAA90332.3 [wormpep150.fasta]
  • 36632 WBGene00008022 gamma-aminobutyric-acid receptor status:Partially_confirmed TR:Q18518 protein_id:CAA90332.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE36632 WBGene00008022 locus:lgc-41 gamma-aminobutyric-acid receptor status:Partially_confirmed UniProt:Q18518_CAEEL protein_id:CAA90332.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE36632 WBGene00008022 locus:lgc-41 gamma-aminobutyric-acid receptor status:Partially_confirmed UniProt:Q18518_CAEEL protein_id:CAA90332.3| [wormORF-contam.fasta]
  • C39B10.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE36632 WBGene00008022 gamma-aminobutyric-acid receptor status:Partially_confirmed [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE36632 WBGene00008022 locus:lgc-41 gamma-aminobutyric-acid receptor status:Partially_confirmed UniProt:Q18518 protein_id:CAA90332.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE36632 WBGene00008022 locus:lgc-41 status:Partially_confirmed UniProt:Q18518 protein_id:CAA90332.3 [wormpep246-ecoli-contam.fasta]
  • Isoform of A7LPG1, Ligand-Gated ion Channel OS=Caenorhabditis elegans GN=lgc-41 PE=3 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 460 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYWSTLHL FQVLCIFIFI RTSSPLTQPN IYNLLQQSNT RPPTANASVP LGVKLGMYLE  60
   61 SLGNFRSSEM SFDVDLYVYM SWQDPRLAHN FSDYVLINND EIRKQIWLPD LYFANARQAS 120
  121 FQEVTVPNFN LFVAPDGTVA YSCRCTLTVA CSLNLRYYPM DQQLCSIRVL SYAYIAKQVN 180
  181 VTWFDKNPVR FNEEIGLPEF QIEHVSNAYC NGSYQYALTE NSYKSDDFSC LSGNLFLSRS 240
  241 IGYNLVQSYI PTGLIVMISW VSFWIDRRAV PARVTLSFTT LVSLTTLGNG LRFGLPQVSY 300
  301 AKAIDLWYGA CMFFVFCALL EFATINSYMR KSEKFDSMAK KMQSVVLTGR RGAAGNVVDA 360
  361 LNDDWCTYST ENGRKSFSAM VGDIFERAGN AISPRRNRYR GVDQCGHFLL ITLKSISANH 420
  421 SRHALKIDKS CRYLFPAAFL LWNVFYWWYY LVYTKTPIDK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..363] PSI-BLAST 66.045757 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    2 View Details [364..460] PSI-BLAST 30.0 Acetylcholine receptor protein, alpha chain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle