YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-41
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.68
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYWSTLHL FQVLCIFIFI RTSSPLTQPN IYNLLQQSNT RPPTANASVP LGVKLGMYLE  60
   61 SLGNFRSSEM SFDVDLYVYM SWQDPRLAHN FSDYVLINND EIRKQIWLPD LYFANARQAS 120
  121 FQEVTVPNFN LFVAPDGTVA YSCRCTLTVA CSLNLRYYPM DQQLCSIRVL SYAYIAKQVN 180
  181 VTWFDKNPVR FNEEIGLPEF QIEHVSNAYC NGSYQYALTE NSYKSDDFSC LSGNLFLSRS 240
  241 IGYNLVQSYI PTGLIVMISW VSFWIDRRAV PARVTLSFTT LVSLTTLGNG LRFGLPQVSY 300
  301 AKAIDLWYGA CMFFVFCALL EFATINSYMR KSEKFDSMAK KMQSVVLTGR RGAAGNVVDA 360
  361 LNDDWCTYST ENGRKSFSAM VGDIFERAGN AISPRRNRYR GVDQCGHFLL ITLKSISANH 420
  421 SRHALKIDKS CRYLFPAAFL LWNVFYWWYY LVYTKTPIDK

Type	Start	End	Confidence
Signal Peptide	1	25	0.67
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	244	0.98
Transmembrane Helix	245	264	0.94
Cytoplasmic	265	273	0.82
Transmembrane Helix	274	295	0.89
Non-Cytoplasmic	296	305	0.84
Transmembrane Helix	306	325	0.95
Cytoplasmic	326	430	0.98
Transmembrane Helix	431	450	0.91
Non-Cytoplasmic	451	460	0.87