| Protein: | lgc-41 |
| Organism: | Caenorhabditis elegans |
| Length: | 460 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-41.
| Description | E-value | Query Range |
Subject Range |
|
|
340.0 | [0..31] | [459..272] |
|
Region A: Residues: [1-363] |
1 11 21 31 41 51
| | | | | |
1 MKKYWSTLHL FQVLCIFIFI RTSSPLTQPN IYNLLQQSNT RPPTANASVP LGVKLGMYLE 60
61 SLGNFRSSEM SFDVDLYVYM SWQDPRLAHN FSDYVLINND EIRKQIWLPD LYFANARQAS 120
121 FQEVTVPNFN LFVAPDGTVA YSCRCTLTVA CSLNLRYYPM DQQLCSIRVL SYAYIAKQVN 180
181 VTWFDKNPVR FNEEIGLPEF QIEHVSNAYC NGSYQYALTE NSYKSDDFSC LSGNLFLSRS 240
241 IGYNLVQSYI PTGLIVMISW VSFWIDRRAV PARVTLSFTT LVSLTTLGNG LRFGLPQVSY 300
301 AKAIDLWYGA CMFFVFCALL EFATINSYMR KSEKFDSMAK KMQSVVLTGR RGAAGNVVDA 360
361 LND
|
| Detection Method: |  |
| Confidence: | 66.045757 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [364-460] |
1 11 21 31 41 51
| | | | | |
1 DWCTYSTENG RKSFSAMVGD IFERAGNAIS PRRNRYRGVD QCGHFLLITL KSISANHSRH 60
61 ALKIDKSCRY LFPAAFLLWN VFYWWYYLVY TKTPIDK
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 1oedA |
| Description: | Acetylcholine receptor protein, alpha chain |
Matching Structure (courtesy of the PDB): |
|
