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Protein Overview: gi|30725648, gi|...

General Information:
Name(s) found: gi|30725648 [NCBI NR]
gi|25402713 [NCBI NR]
gi|25083140 [NCBI NR]
gi|18391366 [NCBI NR]
gi|10086511 [NCBI NR]
Description(s) found:
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  • gi|30725648|gb|AAP37846.1| At1g12230 [Arabidopsis thaliana] [NCBI NR]
  • pir||D86257 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|25083140|gb|AAN72047.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18391366|ref|NP_563900.1| transaldolase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|10086511|gb|AAG12571.1|AC022522_4 Similar to transaldolase [Arabidopsis thaliana] [NCBI NR]
  • (Q9FWX0) T28K15.4 protein (Expressed protein) (At1g12230) [athaliana3702.FASTAC.txt]
  • At1g12230 [Arabidopsis thaliana]gi|25083140|gb|AAN72047.1| expressed protein [Arabidopsis thaliana]gi|25402713|pir||D86257 hypothetical protein [imported] - Arabidopsis thalianagi|18391366|ref|NP_563900.1| transaldolase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transaldolase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transaldolase, putative | chr1:4148048-4150706 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g12230 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Similar to transaldolase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transaldolase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Aldolase superfamily protein | chr1:4148050-4150708 FORWARD LENGTH=405 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g12230 OS=Arabidopsis thaliana GN=T28K15.4 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4IC59, At1g12230 OS=Arabidopsis thaliana GN=T28K15.4 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 405 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: carbohydrate metabolic process [IEA]
    metabolic process [IEA]
    Molecular Function: transaldolase activity [ISS]
    zinc ion binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSLQSPPC ATLSASIRKG RWKTLAAGFS VTPLPAVNFS LRRSIPRILA SASSSSSPAS  60
   61 SSLEAGENNE LNAVSAFSEI VPDTVVFDDF ERFPPTAATV SSALLLGICG LPDTIFRNAV 120
  121 DMALADSSCA GLETTESRLS CFFNKAIVNV GGDLVKLVPG RVSTEVDARL AYDTNGIIRK 180
  181 VHDLLRLYNE IDVPHDRLLF KIPATWQGIE AARLLESEGI QTHMTFVYSF AQAAAASQAG 240
  241 ASVIQIFVGR LRDWARNHSG DTEIESAIKS GEDPGLALVK RSYNYIHKYG YKSKLMAAAV 300
  301 RNKQDLFSLL GVDYVIAPLK VLQSLKDSPA IPDDEKYSFV RKLTPETATH YHFTNKELVK 360
  361 WDQLSLASSM GPASVELLSA GVEGYANQAK RVEELFGKIW PPPNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..405] PSI-BLAST 116.0 Transaldolase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring aldehyde or ketonic groups
    		•  3.28746773527289 bayes_pls_golite062009
  • transaldolase activity
    		•  2.77878684721788 bayes_pls_golite062009
  • catalytic activity
    		•  2.67031204377352 bayes_pls_golite062009
  • fructose-bisphosphate aldolase activity
    		•  2.03916133349076 bayes_pls_golite062009
  • fructose binding
    		•  1.42916270771409 bayes_pls_golite062009
  • porphobilinogen synthase activity
    		•  0.658378297259497 bayes_pls_golite062009
  • binding
    		•  0.467753048702448 bayes_pls_golite062009
  • transferase activity
    		•  0.464721888799972 bayes_pls_golite062009
  • aldehyde-lyase activity
    		•  0.351872954170322 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  0.0319140634878892 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle