YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PGTB1_ARATH

General Information:
Name(s) found: PGTB1_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana GN=GGB PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: CAAX-protein geranylgeranyltransferase complex [IPI]
    Biological Process: response to abscisic acid stimulus [IMP]
    protein geranylgeranylation [IDA]
    response to water deprivation [IMP]
    response to auxin stimulus [IMP]
    negative regulation of abscisic acid mediated signaling pathway [TAS]
    protein amino acid geranylgeranylation [IMP]
    Molecular Function: protein heterodimerization activity [IPI]
    CAAX-protein geranylgeranyltransferase activity [IDA][IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETAVSIDS DRSKSEEEDE EEYSPPVQSS PSANFEKDRH LMYLEMMYEL LPYHYQSQEI  60
   61 NRLTLAHFII SGLHFLGARD RVDKDVVAKW VLSFQAFPTN RVSLKDGEFY GFFGSRSSQF 120
  121 PIDENGDLKH NGSHLASTYC ALAILKVIGH DLSTIDSKSL LISMINLQQD DGSFMPIHIG 180
  181 GETDLRFVYC AAAICYMLDS WSGMDKESAK NYILNCQSYD GGFGLIPGSE SHGGATYCAI 240
  241 ASLRLMGYIG VDLLSNDSSS SIIDPSLLLN WCLQRQANDG GFQGRTNKPS DTCYAFWIGA 300
  301 VLKLIGGDAL IDKMALRKFL MSCQSKYGGF SKFPGQLPDL YHSYYGYTAF SLLEEQGLSP 360
  361 LCPELGLPLL AAPGI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 81.30103 Protein Geranylgeranyltransferase type-I Complexed with Geranylgeranyl Diphosphate

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein geranylgeranyltransferase activity
    		•  12.5056881810294 bayes_pls_golite062009
  • prenyltransferase activity
    		•  11.2095419035102 bayes_pls_golite062009
  • CAAX-protein geranylgeranyltransferase activity
    		•  10.5569796788906 bayes_pls_golite062009
  • protein prenyltransferase activity
    		•  8.21177558804895 bayes_pls_golite062009
  • Rab geranylgeranyltransferase activity
    		•  6.2955313775009 bayes_pls_golite062009
  • protein farnesyltransferase activity
    		•  4.15546866363415 bayes_pls_golite062009
  • binding
    		•  1.68564752993879 bayes_pls_golite062009
  • protein binding
    		•  1.45455287827127 bayes_pls_golite062009
  • transferase activity
    		•  1.0950430724883 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.854896924803117 bayes_pls_golite062009
  • catalytic activity
    		•  0.497699107100544 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle