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Protein Overview: gi|20260608, gi|...

General Information:
Name(s) found: gi|6523065 [NCBI NR]
gi|31711884 [NCBI NR]
gi|20260608 [NCBI NR]
gi|15232595 [NCBI NR]
gi|11357352 [NCBI NR]
Description(s) found:
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  • gi|6523065|emb|CAB62332.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|31711884|gb|AAP68298.1| At3g46620 [Arabidopsis thaliana] [NCBI NR]
  • gi|20260608|gb|AAM13202.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15232595|ref|NP_190246.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T45599 hypothetical protein F12A12.140 - Arabidopsis thaliana [NCBI NR]
  • (Q9SNB6) Hypothetical protein (At3g46620) [athaliana3702.FASTAC.txt]
  • At3g46620 [Arabidopsis thaliana]gi|6523065|emb|CAB62332.1| putative protein [Arabidopsis thaliana]gi|20260608|gb|AAM13202.1| putative protein [Arabidopsis thaliana]gi|11357352|pir||T45599 hypothetical protein F12A12.140 - Arabidopsis thalianagi|152325 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger (C3HC4-type RING finger) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:17189822-17191009 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g46620 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:17178837-17180024 REVERSE LENGTH=395 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g46620 OS=Arabidopsis thaliana GN=F12A12.140 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 395 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to chitin [IEP]
    Molecular Function: zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG  60
   61 FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN RRTSFNPVIV LHGGGGGGAG 120
  121 ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG 180
  181 NGIGRSGNPP ASKSAIESLP RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD 240
  241 CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER 300
  301 ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR 360
  361 VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] FFAS03 1.25 Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
    2 View Details [97..206] deduced N/A No confident structure predictions are available.
    3 View Details [207..312] PSI-BLAST 16.39794 No description for 2cklA was found.
    4 View Details [313..395] Pfam 7.69897 No description for PF06547.3 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.304205134456748 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle