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Protein Overview: LHW_ARATH

General Information:
Name(s) found: LHW_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79323241|ref|NP_001031430.1| LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|5306274|gb|AAD42006.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|32563002|emb|CAE09170.1| bHLH transcription factor [Arabidopsis thaliana] [NCBI NR]
  • pir||D84670 hypothetical protein At2g27230 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|225898144|dbj|BAH30404.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18401363|ref|NP_565640.1| LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1 [Swiss-Prot]
  • (Q9XIN0) At2g27230 protein (BHLH transcription factor) [athaliana3702.FASTAC.txt]
  • expressed protein [Arabidopsis thaliana]gi|32563002|emb|CAE09170.1| bHLH transcription factor [Arabidopsis thaliana]gi|25407871|pir||D84670 hypothetical protein At2g27230 [imported] - Arabidopsis thalianagi|18401363|ref|NP_565640.1| transcription facto [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription factor-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LHW | LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor | chr2:11657973-11660918 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: LHW | LHW (LONESOME HIGHWAY) | chr2:11657973-11660918 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • bHLH transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 650 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: root development [IMP]
    stele development [IMP]
    regulation of transcription [TAS]
    maintenance of root meristem identity [IMP]
    Molecular Function: transcription factor activity [ISS]
    protein homodimerization activity [IPI]
    transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLLREALR SMCVNNQWSY AVFWKIGCQN SSLLIWEECY NETESSSNPR RLCGLGVDTQ  60
   61 GNEKVQLLTN RMMLNNRIIL VGEGLVGRAA FTGHHQWILA NSFNRDVHPP EVINEMLLQF 120
  121 SAGIQTVAVF PVVPHGVVQL GSSLPIMENL GFVNDVKGLI LQLGCVPGAL LSENYRTYEP 180
  181 AADFIGVPVS RIIPSQGHKI LQSSAFVAET SKQHFNSTGS SDHQMVEESP CNLVDEHEGG 240
  241 WQSTTGFLTA GEVAVPSNPD AWLNQNFSCM SNVDAAEQQQ IPCEDISSKR SLGSDDLFDM 300
  301 LGLDDKNKGC DNSWGVSQMR TEVLTRELSD FRIIQEMDPE FGSSGYELSG TDHLLDAVVS 360
  361 GACSSTKQIS DETSESCKTT LTKVSNSSVT TPSHSSPQGS QLFEKKHGQP LGPSSVYGSQ 420
  421 ISSWVEQAHS LKREGSPRMV NKNETAKPAN NRKRLKPGEN PRPRPKDRQM IQDRVKELRE 480
  481 IIPNGAKCSI DALLERTIKH MLFLQNVSKH SDKLKQTGES KIMKEDGGGA TWAFEVGSKS 540
  541 MVCPIVVEDI NPPRIFQVEM LCEQRGFFLE IADWIRSLGL TILKGVIETR VDKIWARFTV 600
  601 EASRDVTRME IFMQLVNILE QTMKCGGNSK TILDGIKATM PLPVTGGCSM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] MSA 8.153982 View MSA. No confident structure predictions are available.
    2 View Details [163..274] deduced N/A No confident structure predictions are available.
    3 View Details [275..454] deduced N/A No confident structure predictions are available.
    4 View Details [455..527] PSI-BLAST 12.522879 SREBP-1a
    5 View Details [528..650] MSA 2.441995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.12507195426228 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43204604575196 bayes_pls_golite062009
  • DNA binding
    		•  0.40884226851256 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.31759335140578 bayes_pls_golite062009
  • transcription factor activity
    		•  0.09721565916723 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle