| Protein: | LHW_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 650 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHW_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
321.0 | [0..5] | [619..3] |
|
Region A: Residues: [1-162] |
1 11 21 31 41 51
| | | | | |
1 MGVLLREALR SMCVNNQWSY AVFWKIGCQN SSLLIWEECY NETESSSNPR RLCGLGVDTQ 60
61 GNEKVQLLTN RMMLNNRIIL VGEGLVGRAA FTGHHQWILA NSFNRDVHPP EVINEMLLQF 120
121 SAGIQTVAVF PVVPHGVVQL GSSLPIMENL GFVNDVKGLI LQ
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [163-274] |
1 11 21 31 41 51
| | | | | |
1 LGCVPGALLS ENYRTYEPAA DFIGVPVSRI IPSQGHKILQ SSAFVAETSK QHFNSTGSSD 60
61 HQMVEESPCN LVDEHEGGWQ STTGFLTAGE VAVPSNPDAW LNQNFSCMSN VD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [275-454] |
1 11 21 31 41 51
| | | | | |
1 AAEQQQIPCE DISSKRSLGS DDLFDMLGLD DKNKGCDNSW GVSQMRTEVL TRELSDFRII 60
61 QEMDPEFGSS GYELSGTDHL LDAVVSGACS STKQISDETS ESCKTTLTKV SNSSVTTPSH 120
121 SSPQGSQLFE KKHGQPLGPS SVYGSQISSW VEQAHSLKRE GSPRMVNKNE TAKPANNRKR 180
181
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [455-527] |
1 11 21 31 41 51
| | | | | |
1 LKPGENPRPR PKDRQMIQDR VKELREIIPN GAKCSIDALL ERTIKHMLFL QNVSKHSDKL 60
61 KQTGESKIMK EDG
|
| Detection Method: | |
| Confidence: | 12.522879 |
| Match: | 1am9A |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.12507195426228 | bayes_pls_golite062009 |
| nucleic acid binding | 0.43204604575196 | bayes_pls_golite062009 |
| DNA binding | 0.40884226851256 | bayes_pls_golite062009 |
| transcription regulator activity | 0.31759335140578 | bayes_pls_golite062009 |
| transcription factor activity | 0.09721565916723 | bayes_pls_golite062009 |
|
Region A: Residues: [528-650] |
1 11 21 31 41 51
| | | | | |
1 GGATWAFEVG SKSMVCPIVV EDINPPRIFQ VEMLCEQRGF FLEIADWIRS LGLTILKGVI 60
61 ETRVDKIWAR FTVEASRDVT RMEIFMQLVN ILEQTMKCGG NSKTILDGIK ATMPLPVTGG 120
121 CSM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
