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Protein Overview: DEXH4_ARATH

General Information:
Name(s) found: DEXH4_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||F96613 hypothetical protein T15M6.6 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15217831|ref|NP_176102.1| helicase domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12321256|gb|AAG50700.1|AC079604_7 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1 [Swiss-Prot]
  • (Q9C6G0) Hypothetical protein [athaliana3702.FASTAC.txt]
  • hypothetical protein T15M6.6 [imported] - Arabidopsis thalianagi|12321256|gb|AAG50700.1| hypothetical protein [Arabidopsis thaliana]gi|15217831|ref|NP_176102.1| helicase domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Helicase domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | helicase domain-containing protein | chr1:21482255-21491504 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA helicase family protein | chr1:21478590-21487839 REVERSE LENGTH=1417 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Helicase domain-containing protein OS=Arabidopsis thaliana GN=T15M6.6 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1417 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA][ISS]
    ATP binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTKKPQKN KQSKNEIASS LIPNSGHKKP SKAPKLLISP ENEDRLRRLL LNFRRTPSPV  60
   61 TATLSVTQKR KKLNNLYENL SCEGFLDNQI ELVLSSLRDG ATLETALDWL CLNLPSHELP 120
  121 VNFSNGASRF PSTGRSVAVI SKSKKDWNVS AESSVQEVKE VPESEVLVRV KSKRDEEEED 180
  181 SLSSCQPSQA DWIHQYMKRL EEEELESSDD ERDKVSGPRS FEVIAKEYCV ERYNAIKAKR 240
  241 KGDKSGQSQA GLAICKLKEE MNALGPSEAI LESEFQRDRQ DCEGAREKEV ASSVLDDVHE 300
  301 SVNADAFFFQ LFDDLTLDTN PVGSCKSEEQ ESVVSNDSLD DLDLGDLFDE DVPPYVPSPH 360
  361 ELLELQKKEI MRELCNEKHL TKLNGIWKKG EAQKIPKALL HQLCQRSGWI APKFNKVTGE 420
  421 GRNFSYTTSV MRKSSGFGKS RQAGGLVTIQ LPHQVEDFES IQDAQNRVAA FALHKLFSDL 480
  481 PVHFAITEPY ASLVLIWKQE ESLGITSREE QRREKFVESL LEADNFSLTT TSRGIHSALP 540
  541 MVDSCVKEND DLDVVKSNHR ARRNSSMAAE CSSLKQKQEN KKKMQKYKDM LKTRAALPIS 600
  601 EVKKDILQKL KEKDVLVVCG ETGSGKTTQV PQFILDDMID SGHGGYCNII CTQPRAITVA 660
  661 QRVADERCEP PPGFDNSVVA YQVRHQNARS DKTRLLFCTT GILLRKLVGD TTLKDVTHII 720
  721 VDEVHERSLM GDFLLIILKS LIEKQSWDNA LPKLKVILMS ATVDAHQFSR YFGQCPIITA 780
  781 QGRTHPVTTY FLEDIYERTK YLLASDSPAA LSSDTSITDK LGSVNVPRGK KNLMLAGWGD 840
  841 SYLVSEDSLN TSYDSIKYIA SAVVDYDLLE ELICHIDDTC EEGAILVFLP GMSEINMLLN 900
  901 RLAASYRFRG ASGDWLLPLH SSIASTEQKK VFLRPPKGIR KVIIATNIAE TSITIEDVVY 960
  961 VIDSGKHKEN RYNPHKKLSS MVEDWVSKAN ARQRMGRAGR VKPGHCFSLY TRHRFEKLMR1020
 1021 PYQVPEMLRV PLVELCLHIK LLGLGQIKPF LSKALEPPSE SAINSAILLL HKVGALEGDE1080
 1081 ELTPLGHHLA KLPVDLLIGK MLLYGGIFGC LSPILSIAAF LSCCKSPFVY AKDEQNVDRV1140
 1141 KLALLSDKLE SSSNLNNNDR QSDHLLMVVA YEKWVRILHE QGFKAAESFC ESKFLNSSVM1200
 1201 RMMRERRVEF GMLLADIGLI NLPKGKGRRK ENFDVWFSDK TQPFNMYSQE PEVVKAILCA1260
 1261 GLCPNIAEGL VNRLTKPAEE TQRYAVWHDG KREVHIHRNS INKNCKAFQY PFIVFLEKLE1320
 1321 TKKVVYLQDT TVVSPFSILL FGGSINVHHQ SGSVTIDGWL KLTAPAQTAV LFKELRLTLH1380
 1381 SILKDLIRKP EKSGIVHNEV VKSMVHLLIE EGKPQHT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] MSA 1.287995 View MSA. No confident structure predictions are available.
    2 View Details [153..312] deduced N/A No confident structure predictions are available.
    3 View Details [313..583] deduced N/A No confident structure predictions are available.
    4 View Details [584..1280] PSI-BLAST 16.69897 No description for 2p6rA was found.
    5 View Details [1281..1417] MSA 2.593976 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

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    Created and Maintained by: Michael Riffle