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Protein Overview: gi|7485930, gi|5...

General Information:
Name(s) found: gi|7485930 [NCBI NR]
gi|7268877 [NCBI NR]
gi|5262221 [NCBI NR]
gi|15233409 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • pir||T10623 hypothetical protein F21C20.160 - Arabidopsis thaliana [NCBI NR]
  • gi|7268877|emb|CAB79081.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|5262221|emb|CAB45847.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233409|ref|NP_193813.1| transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 416 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIIE complex [IEA][ISS]
    Biological Process: transcription initiation from RNA polymerase II promoter [IEA]
    Molecular Function: transcription initiation factor activity [ISS]
    RNA polymerase II transcription factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLVAKTFY DNYTPKNNNQ KKSAKNGSGG IAVLVLDALT RRQWVREEDL AKELKLNTKQ  60
   61 LRTILRYFEE QQFIMRVHRK EKSSATTNGR GEDKVKVHMY SYCCLDYSQI YDVIRYKLHR 120
  121 MKKEFKDVLE DKDNVQEYGC PNCKRKIFFH CENCNGELVM ECNKLTSEEV VVDGSDNPRS 180
  181 RRDHLKDLLQ NMEVRLKPLM DHINRIKDLP VPSFESFPAW ETRVAKAARE NGDLNPDDTL 240
  241 RPQGGYGSTP MPFLGETEIE VNLGEENEDV KSDEVGDSSR RKLTPSWLIK KGMNLSDEQR 300
  301 GEIRHEAKAD DGGSSMENGD DDRNLKDEYL KAYYAAILEE QELAEKLNQQ ESAGKVTTDI 360
  361 ELATSSSDRQ VGMKSKREEE EEEEASVAAN GNYKVDLNVE AEEAEQDEND VDWQEC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 19.39794 An extended winged helix domain in general transcription factor E/IIE alpha
    2 View Details [144..212] PSI-BLAST 8.0 Solution structure of the zinc finger domain of TFIIE alpha
    3 View Details [213..416] MSA 1.052979 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle