| Protein: | gi|7485930, gi|5... |
| Organism: | Arabidopsis thaliana |
| Length: | 416 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7485930, gi|5....
| Description | E-value | Query Range |
Subject Range |
|
|
408.0 | [0..1] | [399..19] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MVKLVAKTFY DNYTPKNNNQ KKSAKNGSGG IAVLVLDALT RRQWVREEDL AKELKLNTKQ 60
61 LRTILRYFEE QQFIMRVHRK EKSSATTNGR GEDKVKVHMY SYCCLDYSQI YDVIRYKLHR 120
121 MKKEFKDVLE DKDNVQEYGC PNC
|
| Detection Method: |  |
| Confidence: | 19.39794 |
| Match: | 1q1hA |
| Description: | An extended winged helix domain in general transcription factor E/IIE alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [144-212] |
1 11 21 31 41 51
| | | | | |
1 KRKIFFHCEN CNGELVMECN KLTSEEVVVD GSDNPRSRRD HLKDLLQNME VRLKPLMDHI 60
61 NRIKDLPVP
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1vd4A |
| Description: | Solution structure of the zinc finger domain of TFIIE alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [213-416] |
1 11 21 31 41 51
| | | | | |
1 SFESFPAWET RVAKAARENG DLNPDDTLRP QGGYGSTPMP FLGETEIEVN LGEENEDVKS 60
61 DEVGDSSRRK LTPSWLIKKG MNLSDEQRGE IRHEAKADDG GSSMENGDDD RNLKDEYLKA 120
121 YYAAILEEQE LAEKLNQQES AGKVTTDIEL ATSSSDRQVG MKSKREEEEE EEASVAANGN 180
181 YKVDLNVEAE EAEQDENDVD WQEC
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
