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Protein Overview: NU50A_ARATH

General Information:
Name(s) found: NU50A_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Nuclear pore complex protein NUP50A OS=Arabidopsis thaliana GN=NUP50A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    Biological Process: intracellular transport [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSENVQQP SKKRGALKQL SRDNPGLDDD DDSAELESGT FKKASDEVLA SRRIVRVKRK  60
   61 EPSAAPVAAS NPFAGIQLVP TTAPASTPVG TNAPLAESKL APAEAVVEDN QKASDIEEGD 120
  121 EVDSKKVDVK DAVGEETEKT KDKDDNHCGK SADVQVAATE VAQMVSCDTN VCNNAVEGTD 180
  181 QTDFPLEKDS GGDQAEKKEK EGNGIEEADK NGDNGAFSSF QQHSSNKNAF TGLASTEASG 240
  241 SSFSFGLVSQ DGSTGTGSLF GFGLPSSNSS SIFGATGSSI IKKSEGSGFP PKQEVSTETG 300
  301 EENEKVAFSA DSIMFEYLDG GWKERGKGEL KVNVSSNDGK ARLVMRAKGN YRLILNASLY 360
  361 PEMKLANMDK KGITFACVNS VSEGKEGLST FALKFKDPTI VEEFRVAIDK HKDSKPMEKA 420
  421 AEKSALPLKT PENSPTATDT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..193] MSA 3.206997 View MSA. No confident structure predictions are available.
    2 View Details [194..301] deduced N/A No confident structure predictions are available.
    3 View Details [302..440] PSI-BLAST 38.39794 Solution structure of the second Ran-binding domain from human RanBP2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.597587183571285 bayes_pls_golite062009
  • protein binding
    		•  0.29116370406325 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle