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Protein Overview: SWA1_ARATH

General Information:
Name(s) found: SWA1_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Protein SLOW WALKER 1 OS=Arabidopsis thaliana GN=SWA1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 530 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: megagametogenesis [IMP]
    embryo sac development [IMP]
    rRNA processing [IMP]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELRVRLN DHQVSKVFPV KPKSTAKPVS ESETPESRYW SSFKNHSTPN LVSSVAALAF  60
   61 SPVHPHSLAV AHSATVSLFS SQSLSSSRRF SFRDVVSSVC FRSDGALFAA CDLSGVVQVF 120
  121 DIKERMALRT LRSHSAPARF VKYPVQDKLH LVSGGDDGVV KYWDVAGATV ISDLLGHKDY 180
  181 VRCGDCSPVN DSMLVTGSYD HTVKVWDARV HTSNWIAEIN HGLPVEDVVY LPSGGLIATA 240
  241 GGNSVKVWDL IGGGKMVCSM ESHNKTVTSL RVARMESAES RLVSVALDGY MKVFDYGRAK 300
  301 VTYSMRFPAP LMSLGLSPDG STRVIGGSNG MVFAGKKKVR DVVGGQKKSL NLWSLISDVD 360
  361 ESRRRALRPT YFRYFQRGQS EKPSKDDYLV KEKKGLKLTR HDKLLKKFRH KEALVSVLEE 420
  421 KKPANVVAVM EELVARRKLM KCVSNMEEGE LGMLLGFLQR YCTVQRYSGL LMGLTKKVLE 480
  481 TRAEDIKGKN EFKGLLRNLK REVNQEIRIQ QSLLEIQGVI APLMRIAGRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] PSI-BLAST 80.69897 No description for 2gnqA was found.
    2 View Details [93..421] PSI-BLAST 48.0 Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
    3 View Details [422..530] Pfam 7.958607 No description for PF09384.1 was found. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle