YRC Public Data Repository - Protein Structure Prediction

Protein:	SWA1_ARATH
Organism:	Arabidopsis thaliana
Length:	530 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWA1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	576.0	[0..3]	[516..1204]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	553.0	[0..3]	[526..1076]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	549.0	[0..3]	[518..980]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	546.0	[0..6]	[515..641]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	544.0	[0..3]	[516..943]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	541.0	[0..3]	[516..190]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	541.0	[0..2]	[515..599]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELRVRLN DHQVSKVFPV KPKSTAKPVS ESETPESRYW SSFKNHSTPN LVSSVAALAF  60
   61 SPVHPHSLAV AHSATVSLFS SQSLSSSRRF SF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #2

Region A:
Residues: [93-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDVVSSVCFR SDGALFAACD LSGVVQVFDI KERMALRTLR SHSAPARFVK YPVQDKLHLV  60
   61 SGGDDGVVKY WDVAGATVIS DLLGHKDYVR CGDCSPVNDS MLVTGSYDHT VKVWDARVHT 120
  121 SNWIAEINHG LPVEDVVYLP SGGLIATAGG NSVKVWDLIG GGKMVCSMES HNKTVTSLRV 180
  181 ARMESAESRL VSVALDGYMK VFDYGRAKVT YSMRFPAPLM SLGLSPDGST RVIGGSNGMV 240
  241 FAGKKKVRDV VGGQKKSLNL WSLISDVDES RRRALRPTYF RYFQRGQSEK PSKDDYLVKE 300
  301 KKGLKLTRHD KLLKKFRHKE ALVSVLEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1trjA
Description:	Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [422-530]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPANVVAVME ELVARRKLMK CVSNMEEGEL GMLLGFLQRY CTVQRYSGLL MGLTKKVLET  60
   61 RAEDIKGKNE FKGLLRNLKR EVNQEIRIQQ SLLEIQGVIA PLMRIAGRS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.958607
Match:	PF09384.1
Description:	No description for PF09384.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.952	N/A	N/A	a.216.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits