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Protein Overview: PUM23_ARATH

General Information:
Name(s) found: PUM23_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||A96747 probable RNA-binding domain T10D10.21 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15293279|gb|AAK93750.1| putative RNA-binding domain protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15218430|ref|NP_177376.1| APUM23 (Arabidopsis Pumilio 23); RNA binding / binding [Arabidopsis thaliana] [NCBI NR]
  • gi|14334736|gb|AAK59546.1| putative RNA-binding domain protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12325275|gb|AAG52582.1|AC016529_13 putative RNA-binding domain; 80649-84245 [Arabidopsis thaliana] [NCBI NR]
  • gi|12323652|gb|AAG51785.1|AC067754_1 unknown protein; 96525-92929 [Arabidopsis thaliana] [NCBI NR]
  • Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1 [Swiss-Prot]
  • (Q9C552) Putative RNA-binding domain (Hypothetical protein) (Putative RNA-binding protein) [athaliana3702.FASTAC.txt]
  • putative RNA-binding domain protein [Arabidopsis thaliana]gi|14334736|gb|AAK59546.1| putative RNA-binding domain protein [Arabidopsis thaliana]gi|25406164|pir||A96747 probable RNA-binding domain T10D10.21 [imported] - Arabidopsis thalianagi|12325275|gb [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pumilio/Puf RNA-binding domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: APUM23 | APUM23 (ARABIDOPSIS PUMILIO 23); RNA binding | chr1:27232646-27236242 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein; 96525-92929 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative RNA-binding domain; 80649-84245 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative RNA-binding domain protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232580 REVERSE LENGTH=753 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 753 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: biological_process [ND]
    Molecular Function: RNA binding [IEA][ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSVGSKSLP SRRHRTIEED SLMGERGKSS NNHSERNKGM RRKDHKGNRG FDVDSSKKNQ  60
   61 SGGAPNVKPA SKKHSEFEHQ NQFVRKEIDP ETSKYFSEIA NLFDSNEVEL EERSVICGNA 120
  121 LEETRGREYE IATDYIISHV LQTLLEGCEL DQLCSFIRNS ASVFPAIAMD RSGSHVAESA 180
  181 LKSLATHLEN PDAYSVIEEA LHSICKVIVD NPLDMMCNCY GSHVLRRLLC LCKGVSLDSP 240
  241 ELYGAKSSKA LAKRLNLKMS QLDDNNLEIP HQGFPGMLTY LLSGLLSCSR EDMKYLQVDQ 300
  301 YSSLVLQTAL RLMLKQDEQL LEIIPLILRC NSTNKKVEGF HIETNVAKEI LESMKDNSFS 360
  361 HLVEVILEVA PESLYNEMFN KVFKNSLFEL SVDRCANFVI QALISHARDQ EQMGIMWEEL 420
  421 APRFKDLLEQ GKSGVVASLI AVSQRLQSHE NKCCEALVGA VCSTNESRIS ILPRLLFLDY 480
  481 YFGCRDKSTW EWAPGAKMHV MGCLILQGIF KFSSDHIQPY ITSLTSMKAE YITETAKDSS 540
  541 GARVIEAFLA SDAATKQKRR LIIKLRGHFG ELSLHTSGSF TVEKCFDACN LTLREAIASE 600
  601 LLDVKVDLSK TKQGPYLLRK LDIDGYASRP DQWKSRQEAK QSTYNEFCSA FGSNKSNFPK 660
  661 NTFVSDASED AAQEIEVKNT RKEIDHHPTS GFKRHREKHA KDKDEPFAGE KRSKQKKNKT 720
  721 SEATDKPKLA GSKRPFLSGE MTGKNRHSNK MRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..445] PSI-BLAST 87.69897 Pumilio 1
    2 View Details [446..753] FFAS03 3.11 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.47395644967726 bayes_pls_golite062009
  • RNA binding
    		•  1.93705682476038 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64539435934931 bayes_pls_golite062009
  • protein binding
    		•  1.50566694420704 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.06250847754412 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.03835316513447 bayes_pls_golite062009
  • DNA binding
    		•  0.946847037737779 bayes_pls_golite062009
  • transcription factor activity
    		•  0.362911773502049 bayes_pls_golite062009
  • actin binding
    		•  0.278432079866074 bayes_pls_golite062009
  • mRNA binding
    		•  0.24761043632368 bayes_pls_golite062009
  • structural molecule activity
    		•  0.175046841784998 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.36800795249393 bayes_pls_golite062009
  • RNA binding
    		•  1.78069099517213 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.59410102249793 bayes_pls_golite062009
  • protein binding
    		•  1.3800948965226 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.08645493064764 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.999774819351011 bayes_pls_golite062009
  • DNA binding
    		•  0.956143892328242 bayes_pls_golite062009
  • transcription factor activity
    		•  0.371244009721798 bayes_pls_golite062009
  • actin binding
    		•  0.258516930127328 bayes_pls_golite062009
  • structural molecule activity
    		•  0.174654450621335 bayes_pls_golite062009
  • mRNA binding
    		•  0.107084556647027 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle