| Protein: | PUM23_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 753 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUM23_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
466.0 | [0..23] | [753..1] |
|
Region A: Residues: [1-445] |
1 11 21 31 41 51
| | | | | |
1 MVSVGSKSLP SRRHRTIEED SLMGERGKSS NNHSERNKGM RRKDHKGNRG FDVDSSKKNQ 60
61 SGGAPNVKPA SKKHSEFEHQ NQFVRKEIDP ETSKYFSEIA NLFDSNEVEL EERSVICGNA 120
121 LEETRGREYE IATDYIISHV LQTLLEGCEL DQLCSFIRNS ASVFPAIAMD RSGSHVAESA 180
181 LKSLATHLEN PDAYSVIEEA LHSICKVIVD NPLDMMCNCY GSHVLRRLLC LCKGVSLDSP 240
241 ELYGAKSSKA LAKRLNLKMS QLDDNNLEIP HQGFPGMLTY LLSGLLSCSR EDMKYLQVDQ 300
301 YSSLVLQTAL RLMLKQDEQL LEIIPLILRC NSTNKKVEGF HIETNVAKEI LESMKDNSFS 360
361 HLVEVILEVA PESLYNEMFN KVFKNSLFEL SVDRCANFVI QALISHARDQ EQMGIMWEEL 420
421 APRFKDLLEQ GKSGVVASLI AVSQR
|
| Detection Method: |  |
| Confidence: | 87.69897 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.47395644967726 | bayes_pls_golite062009 |
| RNA binding | 1.93705682476038 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| protein binding | 1.50566694420704 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.03835316513447 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
| actin binding | 0.278432079866074 | bayes_pls_golite062009 |
| mRNA binding | 0.24761043632368 | bayes_pls_golite062009 |
| structural molecule activity | 0.175046841784998 | bayes_pls_golite062009 |
|
Region A: Residues: [446-753] |
1 11 21 31 41 51
| | | | | |
1 LQSHENKCCE ALVGAVCSTN ESRISILPRL LFLDYYFGCR DKSTWEWAPG AKMHVMGCLI 60
61 LQGIFKFSSD HIQPYITSLT SMKAEYITET AKDSSGARVI EAFLASDAAT KQKRRLIIKL 120
121 RGHFGELSLH TSGSFTVEKC FDACNLTLRE AIASELLDVK VDLSKTKQGP YLLRKLDIDG 180
181 YASRPDQWKS RQEAKQSTYN EFCSAFGSNK SNFPKNTFVS DASEDAAQEI EVKNTRKEID 240
241 HHPTSGFKRH REKHAKDKDE PFAGEKRSKQ KKNKTSEATD KPKLAGSKRP FLSGEMTGKN 300
301 RHSNKMRI
|
| Detection Method: | |
| Confidence: | 3.11 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.36800795249393 | bayes_pls_golite062009 |
| RNA binding | 1.78069099517213 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59410102249793 | bayes_pls_golite062009 |
| protein binding | 1.3800948965226 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08645493064764 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.999774819351011 | bayes_pls_golite062009 |
| DNA binding | 0.956143892328242 | bayes_pls_golite062009 |
| transcription factor activity | 0.371244009721798 | bayes_pls_golite062009 |
| actin binding | 0.258516930127328 | bayes_pls_golite062009 |
| structural molecule activity | 0.174654450621335 | bayes_pls_golite062009 |
| mRNA binding | 0.107084556647027 | bayes_pls_golite062009 |
