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Protein Overview: gi|42572079, gi|...

General Information:
Name(s) found: gi|42572079 [NCBI NR]
gi|42570248 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|42572079|ref|NP_974130.1| APUM23 (Arabidopsis Pumilio 23); RNA binding / binding [Arabidopsis thaliana] [NCBI NR]
  • gi|42570248|ref|NP_849878.2| APUM23 (Arabidopsis Pumilio 23); RNA binding / binding [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 731 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGERGKSSNN HSERNKGMRR KDHKGNRGFD VDSSKKNQSG GAPNVKPASK KHSEFEHQNQ  60
   61 FVRKEIDPET SKYFSEIANL FDSNEVELEE RSVICGNALE ETRGREYEIA TDYIISHVLQ 120
  121 TLLEGCELDQ LCSFIRNSAS VFPAIAMDRS GSHVAESALK SLATHLENPD AYSVIEEALH 180
  181 SICKVIVDNP LDMMCNCYGS HVLRRLLCLC KGVSLDSPEL YGAKSSKALA KRLNLKMSQL 240
  241 DDNNLEIPHQ GFPGMLTYLL SGLLSCSRED MKYLQVDQYS SLVLQTALRL MLKQDEQLLE 300
  301 IIPLILRCNS TNKKVEGFHI ETNVAKEILE SMKDNSFSHL VEVILEVAPE SLYNEMFNKV 360
  361 FKNSLFELSV DRCANFVIQA LISHARDQEQ MGIMWEELAP RFKDLLEQGK SGVVASLIAV 420
  421 SQRLQSHENK CCEALVGAVC STNESRISIL PRLLFLDYYF GCRDKSTWEW APGAKMHVMG 480
  481 CLILQGIFKF SSDHIQPYIT SLTSMKAEYI TETAKDSSGA RVIEAFLASD AATKQKRRLI 540
  541 IKLRGHFGEL SLHTSGSFTV EKCFDACNLT LREAIASELL DVKVDLSKTK QGPYLLRKLD 600
  601 IDGYASRPDQ WKSRQEAKQS TYNEFCSAFG SNKSNFPKNT FVSDASEDAA QEIEVKNTRK 660
  661 EIDHHPTSGF KRHREKHAKD KDEPFAGEKR SKQKKNKTSE ATDKPKLAGS KRPFLSGEMT 720
  721 GKNRHSNKMR I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..422] PSI-BLAST 85.30103 Pumilio 1
    2 View Details [423..731] FFAS03 3.11 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.47395644967726 bayes_pls_golite062009
  • RNA binding
    		•  1.93705682476038 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64539435934931 bayes_pls_golite062009
  • protein binding
    		•  1.50566694420704 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.06250847754412 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.03835316513447 bayes_pls_golite062009
  • DNA binding
    		•  0.946847037737779 bayes_pls_golite062009
  • transcription factor activity
    		•  0.362911773502049 bayes_pls_golite062009
  • actin binding
    		•  0.278432079866074 bayes_pls_golite062009
  • mRNA binding
    		•  0.24761043632368 bayes_pls_golite062009
  • structural molecule activity
    		•  0.175046841784998 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.36800795249393 bayes_pls_golite062009
  • RNA binding
    		•  1.78069099517213 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.59410102249793 bayes_pls_golite062009
  • protein binding
    		•  1.3800948965226 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.08645493064764 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.999774819351011 bayes_pls_golite062009
  • DNA binding
    		•  0.956143892328242 bayes_pls_golite062009
  • transcription factor activity
    		•  0.371244009721798 bayes_pls_golite062009
  • actin binding
    		•  0.258516930127328 bayes_pls_golite062009
  • structural molecule activity
    		•  0.174654450621335 bayes_pls_golite062009
  • mRNA binding
    		•  0.107084556647027 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle