| Protein: | gi|42572079, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 731 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572079, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
472.0 | [0..1] | [731..23] |
|
Region A: Residues: [1-422] |
1 11 21 31 41 51
| | | | | |
1 MGERGKSSNN HSERNKGMRR KDHKGNRGFD VDSSKKNQSG GAPNVKPASK KHSEFEHQNQ 60
61 FVRKEIDPET SKYFSEIANL FDSNEVELEE RSVICGNALE ETRGREYEIA TDYIISHVLQ 120
121 TLLEGCELDQ LCSFIRNSAS VFPAIAMDRS GSHVAESALK SLATHLENPD AYSVIEEALH 180
181 SICKVIVDNP LDMMCNCYGS HVLRRLLCLC KGVSLDSPEL YGAKSSKALA KRLNLKMSQL 240
241 DDNNLEIPHQ GFPGMLTYLL SGLLSCSRED MKYLQVDQYS SLVLQTALRL MLKQDEQLLE 300
301 IIPLILRCNS TNKKVEGFHI ETNVAKEILE SMKDNSFSHL VEVILEVAPE SLYNEMFNKV 360
361 FKNSLFELSV DRCANFVIQA LISHARDQEQ MGIMWEELAP RFKDLLEQGK SGVVASLIAV 420
421 SQ
|
| Detection Method: |  |
| Confidence: | 85.30103 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.47395644967726 | bayes_pls_golite062009 |
| RNA binding | 1.93705682476038 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64539435934931 | bayes_pls_golite062009 |
| protein binding | 1.50566694420704 | bayes_pls_golite062009 |
| transcription regulator activity | 1.06250847754412 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.03835316513447 | bayes_pls_golite062009 |
| DNA binding | 0.946847037737779 | bayes_pls_golite062009 |
| transcription factor activity | 0.362911773502049 | bayes_pls_golite062009 |
| actin binding | 0.278432079866074 | bayes_pls_golite062009 |
| mRNA binding | 0.24761043632368 | bayes_pls_golite062009 |
| structural molecule activity | 0.175046841784998 | bayes_pls_golite062009 |
|
Region A: Residues: [423-731] |
1 11 21 31 41 51
| | | | | |
1 RLQSHENKCC EALVGAVCST NESRISILPR LLFLDYYFGC RDKSTWEWAP GAKMHVMGCL 60
61 ILQGIFKFSS DHIQPYITSL TSMKAEYITE TAKDSSGARV IEAFLASDAA TKQKRRLIIK 120
121 LRGHFGELSL HTSGSFTVEK CFDACNLTLR EAIASELLDV KVDLSKTKQG PYLLRKLDID 180
181 GYASRPDQWK SRQEAKQSTY NEFCSAFGSN KSNFPKNTFV SDASEDAAQE IEVKNTRKEI 240
241 DHHPTSGFKR HREKHAKDKD EPFAGEKRSK QKKNKTSEAT DKPKLAGSKR PFLSGEMTGK 300
301 NRHSNKMRI
|
| Detection Method: | |
| Confidence: | 3.11 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.36800795249393 | bayes_pls_golite062009 |
| RNA binding | 1.78069099517213 | bayes_pls_golite062009 |
| nucleic acid binding | 1.59410102249793 | bayes_pls_golite062009 |
| protein binding | 1.3800948965226 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08645493064764 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.999774819351011 | bayes_pls_golite062009 |
| DNA binding | 0.956143892328242 | bayes_pls_golite062009 |
| transcription factor activity | 0.371244009721798 | bayes_pls_golite062009 |
| actin binding | 0.258516930127328 | bayes_pls_golite062009 |
| structural molecule activity | 0.174654450621335 | bayes_pls_golite062009 |
| mRNA binding | 0.107084556647027 | bayes_pls_golite062009 |
