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Protein Overview: PUB8_ARATH

General Information:
Name(s) found: PUB8_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 374 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [NAS]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    zinc ion binding [IEA]
    protein binding [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFDLPNDFR CPISLEIMSD PVILQSGHTF DRVSIQQWID SGNRTCPITK LPLSETPYLI  60
   61 PNHALRSLIL NFAHVSLKES SRPRTQQEHS HSQSQALIST LVSQSSSNAS KLESLTRLVR 120
  121 LTKRDSSIRR KVTESGAVRA ALDCVDSCNQ VLQEKSLSLL LNLSLEDDNK VGLVADGVIR 180
  181 RIVTVLRVGS PDCKAIAATL LTSLAVVEVN KATIGSYPDA ISALVSLLRV GNDRERKESA 240
  241 TALYALCSFP DNRKRVVDCG SVPILVEAAD SGLERAVEVL GLLVKCRGGR EEMSKVSGFV 300
  301 EVLVNVLRNG NLKGIQYSLF ILNCLCCCSG EIVDEVKREG VVEICFGFED NESEKIRRNA 360
  361 TILVHTLLGI PMSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..374] PSI-BLAST 38.69897 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle