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Protein Overview: gi|15234730, gi|...

General Information:
Name(s) found: gi|7267291 [NCBI NR]
gi|25407331 [NCBI NR]
gi|15234730 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|7267291|emb|CAB81073.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • pir||G85066 hypothetical protein AT4g05310 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15234730|ref|NP_192440.1| ubiquitin family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 415 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein modification process [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVVEILGG SSFEIEVERT DTLLVVKQKI EKSQRVPVSK QTLIVDGIFI LREDLNLDQC  60
   61 QIFHDSQIQL EVSPDVNPIH NNDDQIPQTE QSPPAPWISV EEYFAEQDWP LTEEEIRKIY 120
  121 SYRPETTQDI SKIQDAHQTE ESPPSNSVKE TVNIQDSSVK FASKNNNDQV PPTKQFPQSN 180
  181 LVKKITNGKK RVRQMLVYVS PYPGMNEVPT NILVQVKVTD EVKTLRGLMK LAQEGYIFTH 240
  241 NNQVLNEDQS YECNSVKPLD TIVIVPRRVI QETSKIQDSS VTVQVPQMEQ SPASNSVKEI 300
  301 TDPKKKIKVY VVAASSECKG LKRFIEVDVN STDQVKILRT ELVESGRRGH IRMPHEGYFF 360
  361 VDRKKERVLN EDQSFEWNRV LPAETVYMVS GRDTHFASSF TRGSKVTMLC AQKVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 15.69897 Structure of the DNA repair protein hHR23a
    2 View Details [182..415] FFAS03 3.19 Structure of the DNA repair protein hHR23a

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.0155013961187369 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle