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Protein Overview: GBIS1_ARATH

General Information:
Name(s) found: GBIS1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75213785|sp|Q9T0J9.1|GBIS1_ARATH RecName: Full=(Z)-gamma-bisabolene synthase 1; AltName: Full=Terpenoid synthase 12; Short=AtTPS12 [NCBI NR]
  • pir||T06285 hypothetical protein T9E8.20 - Arabidopsis thaliana [NCBI NR]
  • gi|7268031|emb|CAB78370.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4584533|emb|CAB40763.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15235659|ref|NP_193064.1| lyase [Arabidopsis thaliana] [NCBI NR]
  • (Z)-gamma-bisabolene synthase 1 OS=Arabidopsis thaliana GN=TPS12 PE=1 SV=1 [Swiss-Prot]
  • (Q9T0J9) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|7268031|emb|CAB78370.1| putative protein [Arabidopsis thaliana]gi|7448225|pir||T06285 hypothetical protein T9E8.20 - Arabidopsis thalianagi|15235659|ref|NP_193064.1| terpene synthase/cyclase family protein [Ara [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Terpene synthase/cyclase family protein, predicted protein, Arabidopsis thaliana [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 535 amino acids

    Gene Ontology:
    Cellular Component: peroxisome [IDA]
    Biological Process: sesquiterpenoid biosynthetic process [IDA]
    response to wounding [IEP]
    farnesyl diphosphate metabolic process [IDA]
    Molecular Function: cyclase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQTTFKYE SLAFTKLSHC QWTDYFLSVP IDESELDVIT REIDILKPEV MELLSSQGDD  60
   61 ETSKRKVLLI QLLLSLGLAF HFENEIKNIL EHAFRKIDDI TGDEKDLSTI SIMFRVFRTY 120
  121 GHNLPSSVFK RFTGDDGKFQ QSLTEDAKGI LSLYEAAHLG TTTDYILDEA LKFTSSHLKS 180
  181 LLAGGTCRPH ILRLIRNTLY LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL 240
  241 QLHYIKELKS FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY 300
  301 LLTILDDACD HYFSIHELTR LVACVERWSP DGIDTLEDIS RSVFKLMLDV FDDIGKGVRS 360
  361 EGSSYHLKEM LEELNTLVRA NLDLVKWARG IQVPSFEEHV EVGGIALTSY ATLMYSFVGM 420
  421 GETAGKEAYE WVFLYCQSDM SNGFAANAIN YYMKQFVVTK EEAILECQRM IVDINKTINE 480
  481 ELLKTTSVPG RVLKQALNFG RLLELLYTKS DDIYNCSEGK LKEYIVTLLI DPIRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..535] PSI-BLAST 1000.0 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.87397377711135 bayes_pls_golite062009
  • transferase activity
    		•  1.34929557841705 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.22586398285056 bayes_pls_golite062009
  • prenyltransferase activity
    		•  0.302854173865421 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle