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View Structure Prediction Details

Protein: GBIS1_ARATH
Organism: Arabidopsis thaliana
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GBIS1_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
733.0 [0..9] [535..19]

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Predicted Domain #1
Region A:
Residues: [1-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQTTFKYE SLAFTKLSHC QWTDYFLSVP IDESELDVIT REIDILKPEV MELLSSQGDD  60
   61 ETSKRKVLLI QLLLSLGLAF HFENEIKNIL EHAFRKIDDI TGDEKDLSTI SIMFRVFRTY 120
  121 GHNLPSSVFK RFTGDDGKFQ QSLTEDAKGI LSLYEAAHLG TTTDYILDEA LKFTSSHLKS 180
  181 LLAGGTCRPH ILRLIRNTLY LPQRWNMEAV IAREYISFYE QEEDHDKMLL RLAKLNFKLL 240
  241 QLHYIKELKS FIKWWMELGL TSKWPSQFRE RIVEAWLAGL MMYFEPQFSG GRVIAAKFNY 300
  301 LLTILDDACD HYFSIHELTR LVACVERWSP DGIDTLEDIS RSVFKLMLDV FDDIGKGVRS 360
  361 EGSSYHLKEM LEELNTLVRA NLDLVKWARG IQVPSFEEHV EVGGIALTSY ATLMYSFVGM 420
  421 GETAGKEAYE WVFLYCQSDM SNGFAANAIN YYMKQFVVTK EEAILECQRM IVDINKTINE 480
  481 ELLKTTSVPG RVLKQALNFG RLLELLYTKS DDIYNCSEGK LKEYIVTLLI DPIRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle