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Protein Overview: Y5872_ARATH

General Information:
Name(s) found: Y5872_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
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  • SMR domain-containing protein At5g58720 OS=Arabidopsis thaliana GN=PIPC PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 519 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: mismatch repair [ISS]
    Molecular Function: ATP binding [ISS]
    damaged DNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA  60
   61 FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS SVASGSSGQE TASTSEYGAG 120
  121 SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN 180
  181 GKKAADREKA EQFLSSMLGD DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS 240
  241 GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP 300
  301 QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR 360
  361 KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS KQAQRADERA SQDIFVARNK 420
  421 GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK 480
  481 LLEREGVRYC EENRGTLLIK LDGGSREFSF LDTESDSDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] FFAS03 0.95 No description for 2daiA was found.
    2 View Details [97..181] deduced N/A No confident structure predictions are available.
    3 View Details [182..336] MSA 1.118996 View MSA. No confident structure predictions are available.
    4 View Details [337..414] Pfam 21.366532 No description for PF08590.1 was found. Confident ab initio structure predictions are available.
    5 View Details [415..519] PSI-BLAST 20.69897 No description for 2d9iA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle