YRC Public Data Repository - Protein Structure Prediction

Protein:	Y5872_ARATH
Organism:	Arabidopsis thaliana
Length:	519 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5872_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21553543 - gi\|21553543\|gb\|AAM62636.1\| putative PRL1 associated protein [Arabidopsis thaliana]	472.0	[0..13]	[519..13]
gi\|83767238 - gi\|83767238\|dbj\|BAE57377.1\| unnamed protein product [Aspergillus oryzae] gi\|169769819 - gi\|169769819\|ref\|XP_001819379.1\| hypothetical protein [Aspergillus oryzae RIB40]	321.0	[0..4]	[499..88]
gi\|115398930, gi... - gi\|115398930\|ref\|XP_001215054.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	309.0	[0..5]	[503..90]
gi\|66848309, gi\|... - gi\|70991655\|ref\|XP_750676.1\| Smr domain protein [Aspergillus fumigatus Af293], gi\|66848309\|gb\|EAL886...	291.0	[0..4]	[500..101]
gi\|70880474 - gi\|70880474\|gb\|EAN93569.1\| hypothetical protein, conserved [Trypanosoma cruzi] gi\|71653570 - gi\|71653570\|ref\|XP_815420.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener]	279.0	[0..8]	[485..423]
gi\|49388233, gi\|... - gi\|50911074\|ref\|XP_466970.1\| PRLI-interacting factor N-like [Oryza sativa (japonica cultivar-group)]...	264.0	[0..47]	[499..11]
gi\|67522973, gi\|... - gi\|67522973\|ref\|XP_659547.1\| hypothetical protein AN1943.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	263.0	[0..7]	[497..85]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA  60
   61 FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.95
Match:	2daiA
Description:	No description for 2daiA was found.

Predicted Domain #2

Region A:
Residues: [97-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSTSSVASGS SGQETASTSE YGAGSSSSCS EDLTRDRWFK GSKQSRVIAA TGMVSSVIAK  60
   61 DYLKPNPVRK EFPMMERSKE LCGNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [182-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKAADREKAE QFLSSMLGDD CELSMAVVRD VLCQCGYDVD MALNVLLDMS SSSTDDSLSG  60
   61 KCFGIGVSDS LAESSFDTDT SDCELFWGGD YSQRDYAKAL MSSQDPFATT QGIDELGLPQ 120
  121 KVLESLFNIR QNPKHESKTT SWRNVAKKMQ SLGID

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [337-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASSSSGEEPH PNTFVKDDSY HELRKGANDQ WNVTKSYYQK AAEAYSKGGR AHAAYLSDKG  60
   61 RVASKQAQRA DERASQDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.366532
Match:	PF08590.1
Description:	No description for PF08590.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.949	N/A	N/A	a.7.16	Description not found.

Predicted Domain #5

Region A:
Residues: [415-519]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVARNKGIEN VVTIDLHGQH VKPAMKLLKL HLLFGSYVPS IQTLRVITGC GASGFGKSKV  60
   61 KQSVVKLLER EGVRYCEENR GTLLIKLDGG SREFSFLDTE SDSDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2d9iA
Description:	No description for 2d9iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits