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Protein Overview: gi|15229038, gi|...

General Information:
Name(s) found: gi|7576221 [NCBI NR]
gi|15229038 [NCBI NR]
gi|11358180 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|7576221|emb|CAB87911.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15229038|ref|NP_190452.1| polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T49279 hypothetical protein T21J18.100 - Arabidopsis thaliana [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 881 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    nucleotidyltransferase activity [IEA]
    RNA binding [IEA][ISS]
    polynucleotide adenylyltransferase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLSVGFFA CRSHFPVLPL FYCFSKVQLN TVAAAMETVD DKDSDHHHDK GSNKTSKAPE  60
   61 WKKLNSKDLG ITTSMISKPT RIVLNGLKSK GYDVYLVGGC VRDLILKRTP KDFDILTSAE 120
  121 LREVVRSFSR CEIIGKKFPI CHVHIGNDMI EVSSFSTSAQ NSLRNTRTGS GKSNGSYDED 180
  181 SIRFNNCLQR DFTINGLMFD PYAKVIYDYL GGIEDIKKAK VRTVFHAGTS FQEDSARILR 240
  241 GTRIAARLGF TISKETAHFL KNLSFLVQRL HRGRILLEMN YMLAYGSAEA SLRLLWKFGI 300
  301 LEILLPIQAA YLVRTGFKRR DKRSNLLLSL FGNLDKLLAP DKPCHSSLWL TILALHKALA 360
  361 DQPRYPSVVA AFSLAVHNGG DVLEAVKNTR KVTKPHNRSF FELLEPEEMD SQTLLDEVMD 420
  421 FDSSIKEALG QMTDGRFISK AMAAYPQAPY SDMVFIPLQL YLDARRIFEC VKENGQKGFV 480
  481 PKQDSKREPE DDLETKPILK KHKENSEEEN KEQIKGTVEL LETKSDQAPV KETVEGLDET 540
  541 PDSVEVPKKY MSGLLIRCFP SRKKTLYVCC LPRDTKMPDI IDFFKDVGQV VSVQLTTKRN 600
  601 GLRLSTGFVE FASANEAKKA LDMKNGEYLC GNKLILGMAS CENIAQPKYE DYIQQESLPI 660
  661 EEEETPPKIV QSGANTLGCS IQAAAFSMTD ILSFHFYRLD FFNDVGEVVS VRLIVSPESK 720
  721 HVGYGFVEFA SPCLANMALE KKNGEYLHDH KIFLGVAKTA PYPPRIKYNL AEKLWYEDYL 780
  781 LRDSLLIEED ETVEGLDETP SCVEAVALRE KVLIIAHVPR RTKISHIIDF FKDAGQVVNV 840
  841 RLIVDQKGKP FGRGFVEFTS ADEAKKVRLV YSNDEKYFTS H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..366] PSI-BLAST 71.39794 tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain
    2 View Details [367..467] FFAS03 1.02 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
    3 View Details [468..538] PSI-BLAST 14.39794 No description for 2f3jA was found.
    4 View Details [539..762] PSI-BLAST 35.0 Poly(A)-binding protein
    5 View Details [763..881] PSI-BLAST 9.39794 No description for 2hgnA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.222270543382941 bayes_pls_golite062009
  • transferase activity
    		•  0.00393984128503999 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.64

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle