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Protein Overview: gi|42572755, gi|...

General Information:
Name(s) found: gi|6850840 [NCBI NR]
gi|42572755 [NCBI NR]
gi|15233124 [NCBI NR]
gi|11357717 [NCBI NR]
Description(s) found:
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  • gi|6850840|emb|CAB71079.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|42572755|ref|NP_974473.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15233124|ref|NP_191708.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T47941 hypothetical protein F2A19.90 - Arabidopsis thaliana [NCBI NR]
  • (Q9M318) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11357717|pir||T47941 hypothetical protein F2A19.90 - Arabidopsis thalianagi|42572755|ref|NP_974473.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]g [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr3:22769414-22771112 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Polygalacturonase-like protein OS=Arabidopsis thaliana GN=F2A19.90 PE=4 SV=1 [ARATH-contam.fasta]
  • Polygalacturonase-like protein OS=Arabidopsis thaliana GN=F2A19.90 PE=3 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 476 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN  60
   61 TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF TLFLHKDAIL LAAQDLNEYP 120
  121 ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR 180
  181 PYLIELMFSD TIQISNLTFL DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT 240
  241 NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG 300
  301 IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH 360
  361 YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC ISNATISMAA KHKKAIWMCS 420
  421 DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..476] PSI-BLAST 56.0 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle