YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42572755, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN  60
   61 TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF TLFLHKDAIL LAAQDLNEYP 120
  121 ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR 180
  181 PYLIELMFSD TIQISNLTFL DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT 240
  241 NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG 300
  301 IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH 360
  361 YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC ISNATISMAA KHKKAIWMCS 420
  421 DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS

Type	Start	End	Confidence
Signal Peptide	1	21	0.89
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	476	0.99