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Protein Overview: PUB26_ARATH

General Information:
Name(s) found: PUB26_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75173046|sp|Q9FXA4.1|PUB26_ARATH RecName: Full=U-box domain-containing protein 26; AltName: Full=Plant U-box protein 26 [NCBI NR]
  • pir||E96534 Hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222819|ref|NP_175400.1| PUB26 (PLANT U-BOX 26); binding / ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|115311483|gb|ABI93922.1| At1g49780 [Arabidopsis thaliana] [NCBI NR]
  • gi|10120432|gb|AAG13057.1|AC011807_16 Hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1 [Swiss-Prot]
  • (Q9FXA4) Hypothetical protein [athaliana3702.FASTAC.txt]
  • Hypothetical protein [imported] - Arabidopsis thalianagi|15222819|ref|NP_175400.1| U-box domain-containing protein [Arabidopsis thaliana]gi|10120432|gb|AAG13057.1| Hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U-box domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | U-box domain-containing protein | chr1:18432692-18433957 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g49780 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PUB26 | plant U-box 26 | chr1:18429024-18430289 REVERSE LENGTH=421 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV  60
   61 ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD PISVRSLLSQ ASAITGTHVS 120
  121 VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV 180
  181 LLHMTETECE AVASDPSRVG FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS 240
  241 DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR 300
  301 CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE 360
  361 RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD SWPDDSTVHS DDFNRSEVAP 420
  421 F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] PSI-BLAST 11.0 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    2 View Details [79..357] FFAS03 3.52 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP
    3 View Details [358..421] PSI-BLAST 37.154902 Karyopherin alpha

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.267627928716605 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle