| Protein: | PUB26_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 421 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB26_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
153.0 | [0..66] | [420..3] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV 60
61 ALSDFTLIPN HTLRRLIQ
|
| Detection Method: |  |
| Confidence: | 11.0 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [79-357] |
1 11 21 31 41 51
| | | | | |
1 EWCVANRSNG VERIPTPKQP ADPISVRSLL SQASAITGTH VSVRSRAAAI RRLRGLARDS 60
61 EKNRVLIAGH NAREILVRIL FADIETTSLS SELVSESLAL LVLLHMTETE CEAVASDPSR 120
121 VGFMTRLLFD SSIEIRVNAA ALIEMVLTGA KSMDLKLIIS GSDSIFEGVL DLLKNPISSR 180
181 RALKIGIKAI FALCLVKQTR HLAISAGAPG ILIDRLAADF DRCDTERGLA TVELLCRLPE 240
241 GCAAFGEHAL TVPLMVKTIL RVSDRATEYA AGALLALCT
|
| Detection Method: | |
| Confidence: | 3.52 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.267627928716605 | bayes_pls_golite062009 |
|
Region A: Residues: [358-421] |
1 11 21 31 41 51
| | | | | |
1 AEERCRDEAA AAGLVTQLLL LVQSDCTERA KRKAQMLLKL LRDSWPDDST VHSDDFNRSE 60
61 VAPF
|
| Detection Method: | |
| Confidence: | 37.154902 |
| Match: | 1ee4A |
| Description: | Karyopherin alpha |
Matching Structure (courtesy of the PDB): |
|
