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Protein Overview: PUB39_ARATH

General Information:
Name(s) found: PUB39_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 509 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQHNSPGET PTEFLCPITG FLMSDPVVVA SGQTFERISV QVCRNLSFAP KLHDGTQPDL  60
   61 STVIPNLAMK STILSWCDRN KMEHPRPPDY AYVEGVVRTR MDSLPPGSGH RIAKSEILPP 120
  121 VAENSNSNSD YDSVMGAIRS RSRTSLSSTT SLPLHQTRPI NHSTRIQSSF STSDYSSFPP 180
  181 MSPEEEEIYN KLTSVDTIDH EQGLIQLRKT TRSNETTRIS LCTDRILSLL RSLIVSRYNI 240
  241 VQTNAAASIV NLSLEKPNKL KIVRSGFVPL LIDVLKSGST EAQEHVIGAL FSLAVEEENK 300
  301 MVIGVLGAVE PLLHALRSSE SERARQDAAL ALYHLSLIPN NRSRLVKAGA VPMMLSMIRS 360
  361 GESASRILLL LCNLAACSEG KGAMLDGNAV SILVGKLRES GGAESDAAAR ENCVGALLTL 420
  421 SVGNMRFRGL ASEAGAEEIL TEIVESESGS GRLKEKASKI LQTLRGGGSE FGEGAEAREW 480
  481 NRMLEASGLS RSQFQQGGQK GGFAYSSQF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] PSI-BLAST 12.0 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    2 View Details [125..509] PSI-BLAST 64.0 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle