| Protein: | PUB39_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 509 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB39_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
242.0 | [0..128] | [507..79] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MPQHNSPGET PTEFLCPITG FLMSDPVVVA SGQTFERISV QVCRNLSFAP KLHDGTQPDL 60
61 STVIPNLAMK STILSWCDRN KMEHPRPPDY AYVEGVVRTR MDSLPPGSGH RIAKSEILPP 120
121 VAEN
|
| Detection Method: |  |
| Confidence: | 12.0 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [125-509] |
1 11 21 31 41 51
| | | | | |
1 SNSNSDYDSV MGAIRSRSRT SLSSTTSLPL HQTRPINHST RIQSSFSTSD YSSFPPMSPE 60
61 EEEIYNKLTS VDTIDHEQGL IQLRKTTRSN ETTRISLCTD RILSLLRSLI VSRYNIVQTN 120
121 AAASIVNLSL EKPNKLKIVR SGFVPLLIDV LKSGSTEAQE HVIGALFSLA VEEENKMVIG 180
181 VLGAVEPLLH ALRSSESERA RQDAALALYH LSLIPNNRSR LVKAGAVPMM LSMIRSGESA 240
241 SRILLLLCNL AACSEGKGAM LDGNAVSILV GKLRESGGAE SDAAARENCV GALLTLSVGN 300
301 MRFRGLASEA GAEEILTEIV ESESGSGRLK EKASKILQTL RGGGSEFGEG AEAREWNRML 360
361 EASGLSRSQF QQGGQKGGFA YSSQF
|
| Detection Method: | |
| Confidence: | 64.0 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
