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Protein Overview: RLF_ARATH

General Information:
Name(s) found: RLF_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79327401|ref|NP_001031861.1| cytochrome b5 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|7671421|emb|CAB89362.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51969432|dbj|BAD43408.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51968362|dbj|BAD42873.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|34146794|gb|AAQ62405.1| At5g09680 [Arabidopsis thaliana] [NCBI NR]
  • gi|15242486|ref|NP_196530.1| cytochrome b5 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T49930 hypothetical protein F17I14.130 - Arabidopsis thaliana [NCBI NR]
  • Cytochrome b5 domain-containing protein RLF OS=Arabidopsis thaliana GN=RLF PE=2 SV=1 [Swiss-Prot]
  • (Q9LXD1) Hypothetical protein [athaliana3702.FASTAC.txt]
  • At5g09680 [Arabidopsis thaliana]gi|7671421|emb|CAB89362.1| putative protein [Arabidopsis thaliana]gi|51969432|dbj|BAD43408.1| unknown protein [Arabidopsis thaliana]gi|51968362|dbj|BAD42873.1| unknown protein [Arabidopsis thaliana]gi|11357500|pir||T499 [nrdb_11152004_Chlamydomonas]
  • | Symbols: | cytochrome b5 domain-containing protein | chr5:2999363-3000186 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g09680 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RLF | reduced lateral root formation | chr5:2999362-3000185 REVERSE LENGTH=211 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g09680 OS=Arabidopsis thaliana GN=F17I14_130 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 211 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDA]
    Biological Process: lateral root formation [IMP]
    Molecular Function: heme binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSRDDDFT FSKVSPPDSE VKDLASDVGS ITLKDGLDQQ KSNGLIWKDK SLPPKEETIG  60
   61 SLSFTVTDSS SSKKQSNESS ETFKTPARKP ITRTKVPFEK GYSQMDWLKL TRTHPDLAGL 120
  121 KGESNKRLIP MDEVKKHRTG DSMWTVLKGR VYNISPYMNF HPGGVDMLMK AVGRDGTLLF 180
  181 NKYHAWVNVD ILLEKCLVGV LDDTKVKKQE P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] deduced N/A No confident structure predictions are available.
    2 View Details [123..211] PSI-BLAST 30.154902 No description for 2ibjA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle