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Protein Overview: CSCL2_ARATH

General Information:
Name(s) found: CSCL2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7269775|emb|CAB77775.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4263507|gb|AAD15333.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||H85036 hypothetical protein AT4g02900 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15236212|ref|NP_192199.1| early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] [NCBI NR]
  • CSC1-like protein At4g02900 OS=Arabidopsis thaliana GN=At4g02900 PE=3 SV=1 [Swiss-Prot]
  • (Q9SY14) Hypothetical protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|4263507|gb|AAD15333.1| hypothetical protein [Arabidopsis thaliana]gi|25407162|pir||H85036 hypothetical protein AT4g02900 [imported] - Arabidopsis thalianagi|15236212|ref|NP_192199.1| early-responsive to deh [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Early-responsive to dehydration protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | early-responsive to dehydration protein-related / ERD protein-related | chr4:1284066-1287747 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=785 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • ERD (Early-responsive to dehydration stress) family protein OS=Arabidopsis thaliana GN=T5J8.22 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 785 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA]
    endomembrane system [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVQDIGLS AAINLLSAFA FLFAFAMLRL QPVNDRVYFP KWYLKGIRGS PTRSRGIMTR  60
   61 FVNLDWTTYV KFLNWMPAAL QMPEPELIEH AGLDSAVYIR IYLLGLKMFV PITLLAFGVL 120
  121 VPVNWTGETL ENIDDLTFSN VDKLSISNVP PGSPRFWAHI TMTYVITFWT CYILYMEYKA 180
  181 VANMRLRHLA AESRRPDQLT VLVRNVPPDP DESVNEHVEH FFCVNHPDHY LCHQVVYNAN 240
  241 DLAKLVAQRK AMQNWLTYYE NKFERKPSSR PTTKTGYGGF WGTTVDAIDF YTSKMDILAE 300
  301 QEAVEREKIM NDPKAIMPAA FVSFRSRWGT AVCAQTQQCH NPTIWLTEWA PEPRDVFWDN 360
  361 LAIPYVELSI RRLLTTVALF FLIFCFMIPI AFVQSLANLE GIQKVLPFLK PVIEMKTVKS 420
  421 VIQGFLPGIA LKIFLIILPT ILMTMSQIEG YTSLSYLDRR SAEKYFWFII VNVFLGSIIT 480
  481 GTAFQQLKSF LEQPPTEIPK TVGVSIPMKA TFFITYIMVD GWAGIAAEIL RVVPLVIFHL 540
  541 KNTFLVKTEQ DRQQAMDPGH LDFATSEPRI QFYFLLGLVY AAVAPILLPF IIVFFAFAYV 600
  601 VFRHQVINVY DQKYESGARY WPDVHRRLII CLIISQLLMM GLLSTKKFAK VTALLLPQPI 660
  661 LTFWFYRYCA GRFESAFSKF PLQEAMVKDT LEKATEPNLN LKEYLKDAYV HPVFKGNDFD 720
  721 RPRVVDEEES NPLVRTKRTS QGTTRYNSEA SSSATTTPVA NNDSPRCWGT KIGSFGCVIV 780
  781 VSYSC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] MSA 1.173983 View MSA. No confident structure predictions are available.
    2 View Details [182..362] FFAS03 1.25 Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen
    3 View Details [363..546] MSA 8.376996 View MSA. No confident structure predictions are available.
    4 View Details [547..785] MSA 11.381992 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle