| Protein: | CSCL2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 785 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSCL2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
612.0 | [0..1] | [757..1] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MASVQDIGLS AAINLLSAFA FLFAFAMLRL QPVNDRVYFP KWYLKGIRGS PTRSRGIMTR 60
61 FVNLDWTTYV KFLNWMPAAL QMPEPELIEH AGLDSAVYIR IYLLGLKMFV PITLLAFGVL 120
121 VPVNWTGETL ENIDDLTFSN VDKLSISNVP PGSPRFWAHI TMTYVITFWT CYILYMEYKA 180
181 V
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [182-362] |
1 11 21 31 41 51
| | | | | |
1 ANMRLRHLAA ESRRPDQLTV LVRNVPPDPD ESVNEHVEHF FCVNHPDHYL CHQVVYNAND 60
61 LAKLVAQRKA MQNWLTYYEN KFERKPSSRP TTKTGYGGFW GTTVDAIDFY TSKMDILAEQ 120
121 EAVEREKIMN DPKAIMPAAF VSFRSRWGTA VCAQTQQCHN PTIWLTEWAP EPRDVFWDNL 180
181 A
|
| Detection Method: | |
| Confidence: | 1.25 |
| Match: | 1zh5A |
| Description: | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [363-546] |
1 11 21 31 41 51
| | | | | |
1 IPYVELSIRR LLTTVALFFL IFCFMIPIAF VQSLANLEGI QKVLPFLKPV IEMKTVKSVI 60
61 QGFLPGIALK IFLIILPTIL MTMSQIEGYT SLSYLDRRSA EKYFWFIIVN VFLGSIITGT 120
121 AFQQLKSFLE QPPTEIPKTV GVSIPMKATF FITYIMVDGW AGIAAEILRV VPLVIFHLKN 180
181 TFLV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [547-785] |
1 11 21 31 41 51
| | | | | |
1 KTEQDRQQAM DPGHLDFATS EPRIQFYFLL GLVYAAVAPI LLPFIIVFFA FAYVVFRHQV 60
61 INVYDQKYES GARYWPDVHR RLIICLIISQ LLMMGLLSTK KFAKVTALLL PQPILTFWFY 120
121 RYCAGRFESA FSKFPLQEAM VKDTLEKATE PNLNLKEYLK DAYVHPVFKG NDFDRPRVVD 180
181 EEESNPLVRT KRTSQGTTRY NSEASSSATT TPVANNDSPR CWGTKIGSFG CVIVVSYSC
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
