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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSCL2_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVQDIGLS AAINLLSAFA FLFAFAMLRL QPVNDRVYFP KWYLKGIRGS PTRSRGIMTR  60
   61 FVNLDWTTYV KFLNWMPAAL QMPEPELIEH AGLDSAVYIR IYLLGLKMFV PITLLAFGVL 120
  121 VPVNWTGETL ENIDDLTFSN VDKLSISNVP PGSPRFWAHI TMTYVITFWT CYILYMEYKA 180
  181 VANMRLRHLA AESRRPDQLT VLVRNVPPDP DESVNEHVEH FFCVNHPDHY LCHQVVYNAN 240
  241 DLAKLVAQRK AMQNWLTYYE NKFERKPSSR PTTKTGYGGF WGTTVDAIDF YTSKMDILAE 300
  301 QEAVEREKIM NDPKAIMPAA FVSFRSRWGT AVCAQTQQCH NPTIWLTEWA PEPRDVFWDN 360
  361 LAIPYVELSI RRLLTTVALF FLIFCFMIPI AFVQSLANLE GIQKVLPFLK PVIEMKTVKS 420
  421 VIQGFLPGIA LKIFLIILPT ILMTMSQIEG YTSLSYLDRR SAEKYFWFII VNVFLGSIIT 480
  481 GTAFQQLKSF LEQPPTEIPK TVGVSIPMKA TFFITYIMVD GWAGIAAEIL RVVPLVIFHL 540
  541 KNTFLVKTEQ DRQQAMDPGH LDFATSEPRI QFYFLLGLVY AAVAPILLPF IIVFFAFAYV 600
  601 VFRHQVINVY DQKYESGARY WPDVHRRLII CLIISQLLMM GLLSTKKFAK VTALLLPQPI 660
  661 LTFWFYRYCA GRFESAFSKF PLQEAMVKDT LEKATEPNLN LKEYLKDAYV HPVFKGNDFD 720
  721 RPRVVDEEES NPLVRTKRTS QGTTRYNSEA SSSATTTPVA NNDSPRCWGT KIGSFGCVIV 780
  781 VSYSC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle