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Protein Overview: gi|25403098, gi|...

General Information:
Name(s) found: gi|25403098 [NCBI NR]
gi|15220638 [NCBI NR]
gi|12324175 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • pir||A86424 unknown protein, 35070-37205 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220638|ref|NP_174294.1| intron maturase, type II family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12324175|gb|AAG52062.1|AC022455_16 unknown protein; 35070-37205 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 711 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA splicing [IEA][ISS]
    RNA-dependent DNA replication [IEA][ISS]
    Molecular Function: RNA-directed DNA polymerase activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLTYPLSS LRNIVEHFHC NTFHKPISSL SISPTLKSES REPSSTQDPY SLLKQDPVDI  60
   61 CLSLWVKSFS SPPSATFSNL TGFLSKFDLW VLAYQRTCAH VTGTFPPRNA IHANALRSLL 120
  121 SLQNAVTRSG GKFRWNDKMN QYVRSPKDKI SMNGGEGMSK GKVRRIIESE EPIFQDRVVH 180
  181 EVLLMILEPF FEARFSSKSH GFRPGRNPHT VIRTIRSNFA GYLWFMKGDV SEMLDHVDVD 240
  241 VVMNCLQKVV KDRKVLGLIE SSLKFSDKRV LKRVVEKHGN DNGLGTKRRI EREKRNKTKK 300
  301 KILSDDEPKP DPYWLRTFYS FAPKEAAKVP SYGYCGVLSP LLANVCLNEL DRFMETKIVE 360
  361 YFSPCKDDSI WKESIEDGCH NPAWPEFVPS SGKEKTRKMD YIRYGGHFLI GIRGPREDAV 420
  421 KMRKEIIDFC DRVFGVRLDN SKLEIEHISR GIQFLDHIIC RRVIYPTLRY TGSGGSIVSK 480
  481 KGVGTLLSVS ASLEQCIRQF RRLAFVKGDK DPEPLPCNPM LYSSQSHSNS QMNKFLETMA 540
  541 DWYKYADNRK KAVGFCAYVI RSSLAKLYAA RYRLKSRAKV YSIASRDLSH PLSESSNNSA 600
  601 PEYSDLLRMG LVDAIEGVQF SRMSLIPSCD YTPFPRNWIP NHEQVLQEYI RLQDPKFFCG 660
  661 LHRSIKREGL TLPQDEISEA VWDFKTLGAW RSKYENKREA DDGLQKLDSQ T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..572] FFAS03 2.11 Crystal structure of RNA-dependent RNA Polymerase 3D from human rhinovirus serotype 16
    2 View Details [573..711] MSA 3.134991 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.455736130840876 bayes_pls_golite062009
  • transferase activity
    		•  0.1348265745695 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0290819848545603 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle